Semantic Role Labeling for Biological Transport

Semantic role labeling (SRL) is a technique of semantic interpretation of text on the sentence level. In this paper, we present a corpus that is labeled with semantic roles for biological transport events. The corpus was built using domain knowledge provided by ontologies. We also report on a word-chunking approach for identifying semantic roles of biomedical predicates describing transport events. We trained a first-order Conditional Random Fields (CRF) for chunking applications with the traditional role labeling features and also domain-specific features. The results show that the system performance varies between different roles and the performance was not improved for all roles by introducing domain specific features.