Deciphering the unique dynamic activation pathway in a G protein-coupled receptor enables unveiling biased signaling and identifying cryptic allosteric sites in conformational intermediates
Fan, Jigang, Zhu, Chunhao, Lan, Xiaobing, Zhuang, Haiming, Li, Mingyu, Zhang, Jian, Lu, Shaoyong
–arXiv.org Artificial Intelligence
N eurotensin receptor 1 (NTSR1), a member of the C lass A G protein - coupled receptor superfamily, plays a n important role in modulating dopamine rgic neuronal activity and eliciting opioid - independent analgesia. Recent studies suggest that promoting β - arrestin - bias ed signaling in NTSR1 may diminish drugs of abuse, such as psychostimulants, thereby offering a potential avenue for treating human addiction - related disorders . In this study, we utiliz e d a novel computational and experimental approach that combined nudged elastic band - based molecular dynamics simulations, Markov state models, temporal communication network analysis, site - directed mutagenesis, and conformational biosensors, to explore the intricate mechanisms underlying NTSR1 activation and bias ed signal ing . Our study reveal s a dynamic stepwise transition mechanism and activat ed transmission network associated with NTSR1 activation. It also yield s valuable insights into the complex interplay between the unique polar network, non - conserved ion locks, and aromatic clusters in NTSR1 signaling. Moreover, we identif ied a cryptic allosteric site located in the intracellular r egion of the receptor that exists in an intermediate state within the activation pathway. Collectively, these findings contribute to a more profound understanding of NTSR1 activation and biased signal ing at the atomic level, thereby providing a potential strateg y for the development of NTSR1 allosteric modulators in the realm of G protein - coupled receptor biology, biophysics, and medicine.
arXiv.org Artificial Intelligence
Apr-25-2025
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