Building trustworthy clinical AI systems requires not only accurate predictions but also transparent, biologically grounded explanations. We present \texttt{DiagnoLLM}, a hybrid framework that integrates Bayesian deconvolution, eQTL-guided deep learning, and LLM-based narrative generation for interpretable disease diagnosis. DiagnoLLM begins with GP-unmix, a Gaussian Process-based hierarchical model that infers cell-type-specific gene expression profiles from bulk and single-cell RNA-seq data while modeling biological uncertainty. These features, combined with regulatory priors from eQTL analysis, power a neural classifier that achieves high predictive performance in Alzheimer's Disease (AD) detection (88.0\% accuracy). To support human understanding and trust, we introduce an LLM-based reasoning module that translates model outputs into audience-specific diagnostic reports, grounded in clinical features, attribution signals, and domain knowledge. Human evaluations confirm that these reports are accurate, actionable, and appropriately tailored for both physicians and patients. Our findings show that LLMs, when deployed as post-hoc reasoners rather than end-to-end predictors, can serve as effective communicators within hybrid diagnostic pipelines.

The advancement of artificial intelligence in oral healthcare relies on the availability of large-scale multimodal datasets that capture the complexity of clinical practice. In this paper, we present a comprehensive multimodal dataset, comprising 8775 dental checkups from 4800 patients collected over eight years (2018-2025), with patients ranging from 10 to 90 years of age. The dataset includes 50000 intraoral images, 8056 radiographs, and detailed textual records, including diagnoses, treatment plans, and follow-up notes. The data were collected under standard ethical guidelines and annotated for benchmarking. To demonstrate its utility, we fine-tuned state-of-the-art large vision-language models, Qwen-VL 3B and 7B, and evaluated them on two tasks: classification of six oro-dental anomalies and generation of complete diagnostic reports from multimodal inputs. We compared the fine-tuned models with their base counterparts and GPT-4o. The fine-tuned models achieved substantial gains over these baselines, validating the dataset and underscoring its effectiveness in advancing AI-driven oro-dental healthcare solutions. The dataset is publicly available, providing an essential resource for future research in AI dentistry.

Interest in generative Electrocardiogram-Language Models (ELMs) is growing, as they can produce textual responses conditioned on ECG signals and textual queries. Unlike traditional classifiers that output label probabilities, ELMs are more versatile, supporting domain-specific tasks (e.g., waveform analysis, diagnosis, prognosis) as well as general tasks (e.g., open-ended questions, dialogue). Retrieval-Augmented Generation (RAG), widely used in Large Language Models (LLMs) to ground LLM outputs in retrieved knowledge, helps reduce hallucinations and improve natural language generation (NLG). However, despite its promise, no open-source implementation or systematic study of RAG pipeline design for ELMs currently exists. To address this gap, we present the first open-source RAG pipeline for ELMs, along with baselines and ablation studies for NLG. Experiments on three public datasets show that ELMs with RAG consistently improves performance over non-RAG baselines and highlights key ELM design considerations. Our code is available at: https://github.com/willxxy/ECG-Bench.

This study presents DiagCoT, a multi-stage framework that applies supervised fine-tuning to general-purpose vision-language models (VLMs) to emulate radiologists' stepwise diagnostic reasoning using only free-text reports. DiagCoT combines contrastive image-report tuning for domain alignment, chain-of-thought supervision to capture inferential logic, and reinforcement tuning with clinical reward signals to enhance factual accuracy and fluency. On the MIMIC-CXR benchmark, DiagCoT improved zero-shot disease classification AUC from 0.52 to 0.76 (absolute gain of 0.24), pathology grounding mIoU from 0.08 to 0.31 (absolute gain of 0.23), and report generation BLEU from 0.11 to 0.33 (absolute gain of 0.22). It outperformed state-of-the-art models including LLaVA-Med and CXR-LLAVA on long-tailed diseases and external datasets. By converting unstructured clinical narratives into structured supervision, DiagCoT offers a scalable approach for developing interpretable and diagnostically competent AI systems for radiology.

This study investigates how accurately different evaluation metrics capture the quality of causal explanations in automatically generated diagnostic reports. We compare six metrics: BERTScore, Cosine Similarity, BioSentVec, GPT-White, GPT-Black, and expert qualitative assessment across two input types: observation-based and multiple-choice-based report generation. Two weighting strategies are applied: one reflecting task-specific priorities, and the other assigning equal weights to all metrics. Our results show that GPT-Black demonstrates the strongest discriminative power in identifying logically coherent and clinically valid causal narratives. GPT-White also aligns well with expert evaluations, while similarity-based metrics diverge from clinical reasoning quality. These findings emphasize the impact of metric selection and weighting on evaluation outcomes, supporting the use of LLM-based evaluation for tasks requiring interpretability and causal reasoning.

Standardization of clinical reports is crucial for improving the quality of healthcare and facilitating data integration. The lack of unified standards, including format, terminology, and style, is a great challenge in clinical fundus diagnostic reports, which increases the difficulty for large language models (LLMs) to understand the data. To address this, we construct a bilingual standard terminology, containing fundus clinical terms and commonly used descriptions in clinical diagnosis. Then, we establish two models, RetSTA-7B-Zero and RetSTA-7B. RetSTA-7B-Zero, fine-tuned on an augmented dataset simulating clinical scenarios, demonstrates powerful standardization behaviors. However, it encounters a challenge of limitation to cover a wider range of diseases. To further enhance standardization performance, we build RetSTA-7B, which integrates a substantial amount of standardized data generated by RetSTA-7B-Zero along with corresponding English data, covering diverse complex clinical scenarios and achieving report-level standardization for the first time. Experimental results demonstrate that RetSTA-7B outperforms other compared LLMs in bilingual standardization task, which validates its superior performance and generalizability.

This study introduces an evaluation framework for multimodal models in medical imaging diagnostics. We developed a pipeline incorporating data preprocessing, model inference, and preference-based evaluation, expanding an initial set of 500 clinical cases to 3,000 through controlled augmentation. Our method combined medical images with clinical observations to generate assessments, using Claude 3.5 Sonnet for independent evaluation against physician-authored diagnoses. The results indicated varying performance across models, with Llama 3.2-90B outperforming human diagnoses in 85.27% of cases. In contrast, specialized vision models like BLIP2 and Llava showed preferences in 41.36% and 46.77% of cases, respectively. This framework highlights the potential of large multimodal models to outperform human diagnostics in certain tasks.

The rapid advancements in Large Language Models (LLMs) and Vision-Language Models (VLMs) have shown great potential in medical diagnostics, particularly in radiology, where datasets such as X-rays are paired with human-generated diagnostic reports. However, a significant research gap exists in the neuroimaging field, especially for conditions such as Alzheimer's disease, due to the lack of comprehensive diagnostic reports that can be utilized for model fine-tuning. This paper addresses this gap by generating synthetic diagnostic reports using GPT-4o-mini on structured data from the OASIS-4 dataset, which comprises 663 patients. Using the synthetic reports as ground truth for training and validation, we then generated neurological reports directly from the images in the dataset leveraging the pre-trained BiomedCLIP and T5 models. Our proposed method achieved a BLEU-4 score of 0.1827, ROUGE-L score of 0.3719, and METEOR score of 0.4163, revealing its potential in generating clinically relevant and accurate diagnostic reports.

In this paper, we introduce a novel Multi-Modal Contrastive Pre-training Framework that synergistically combines X-rays, electrocardiograms (ECGs), and radiology/cardiology reports. Our approach leverages transformers to encode these diverse modalities into a unified representation space, aiming to enhance diagnostic accuracy and facilitate comprehensive patient assessments. We utilize LoRA-Peft to significantly reduce trainable parameters in the LLM and incorporate recent linear attention dropping strategy in the Vision Transformer(ViT) for smoother attention. Furthermore, we provide novel multimodal attention explanations and retrieval for our model. To the best of our knowledge, we are the first to propose an integrated model that combines X-ray, ECG, and Radiology/Cardiology Report with this approach. By utilizing contrastive loss, MoRE effectively aligns modality-specific features into a coherent embedding, which supports various downstream tasks such as zero-shot classification and multimodal retrieval. Employing our proposed methodology, we achieve state-of-the-art (SOTA) on the Mimic-IV, CheXpert, Edema Severity, and PtbXl downstream datasets, surpassing existing multimodal approaches. Our proposed framework shows significant improvements in capturing intricate inter-modal relationships and its robustness in medical diagnosis that establishes a framework for future research in multimodal learning in the healthcare sector.

Multimodal large language models (MLLMs) have achieved significant success in the general field of image processing. Their emerging task generalization and freeform conversational capabilities can greatly facilitate medical diagnostic assistance, helping patients better understand their conditions and enhancing doctor-patient trust. Computed Tomography (CT) is a non-invasive imaging technique used to capture the internal mechanisms of a patient's condition and is widely utilized. However, in past research, the complex textural features of this imaging data have made accurate interpretation by algorithms challenging, impeding the performance of general LLMs in diagnostic assistance. To address this, we developed OrthoDoc, a MLLM designed for CT diagnostics. OrthoDoc is trained on 120,000 CT images and diagnostic reports and includes a Retrieval-Augmented Generation (RAG) module capable of effectively mitigating model hallucinations. This module is informed by extensive medical literature, textbooks, and explanatory data. Thus, OrthoDoc not only processes complex CT images but also stores, understands, and reasons over medical knowledge and language. In extensive experiments, OrthoDoc outperforms commercial models led by GPT-4, demonstrating superior diagnostic capabilities and accuracy. Specifically, OrthoDoc significantly surpasses existing models in the diagnosis of common orthopedic conditions such as fractures, arthritis, and tumors. Additionally, OrthoDoc exhibits robust generalization and stability when handling rare and complex cases.