anatomy
MosaicMRI: A Diverse Dataset and Benchmark for Raw Musculoskeletal MRI
Arguello, Paula, Tinaz, Berk, Sepehri, Mohammad Shahab, Soltanolkotabi, Maryam, Soltanolkotabi, Mahdi
Deep learning underpins a wide range of applications in MRI, including reconstruction, artifact removal, and segmentation. However, progress has been driven largely by public datasets focused on brain and knee imaging, shaping how models are trained and evaluated. As a result, careful studies of the reliability of these models across diverse anatomical settings remain limited. In this work, we introduce MosaicMRI, a large and diverse collection of fully sampled raw musculoskeletal (MSK) MR measurements designed for training and evaluating machine-learning-based methods. MosaicMRI is the largest open-source raw MSK MRI dataset to date, comprising 2,671 volumes and 80,156 slices. The dataset offers substantial diversity in volume orientation (e.g., axial, sagittal), imaging contrasts (e.g., PD, T1, T2), anatomies (e.g., spine, knee, hip, ankle, and others), and numbers of acquisition coils. Using VarNet as a baseline for accelerated reconstruction task, we perform a comprehensive set of experiments to study scaling behavior with respect to both model capacity and dataset size. Interestingly, models trained on the combined anatomies significantly outperform anatomy-specific models in low-sample regimes, highlighting the benefits of anatomical diversity and the presence of exploitable cross-anatomical correlations. We further evaluate robustness and cross-anatomy generalization by training models on one anatomy (e.g., spine) and testing them on another (e.g., knee). Notably, we identify groups of body parts (e.g., foot and elbow) that generalize well with each other, and highlight that performance under domain shifts depends on both training set size, anatomy, and protocol-specific factors.
- Health & Medicine > Diagnostic Medicine > Imaging (0.68)
- Health & Medicine > Health Care Technology (0.68)
FalconBC: Flow matching for Amortized inference of Latent-CONditioned physiologic Boundary Conditions
Choi, Chloe H., Marsden, Alison L., Schiavazzi, Daniele E.
Boundary condition tuning is a fundamental step in patient-specific cardiovascular modeling. Despite an increase in offline training cost, recent methods in data-driven variational inference can efficiently estimate the joint posterior distribution of boundary conditions, with amortization of training efforts over clinical targets. However, even the most modern approaches fall short in two important scenarios: open-loop models with known mean flow and assumed waveform shapes, and anatomies affected by vascular lesions where segmentation influences the reachability of pressure or flow split targets. In both cases, boundary conditions cannot be tuned in isolation. We introduce a general amortized inference framework based on probabilistic flow that treats clinical targets, inflow features, and point cloud embeddings of patient-specific anatomies as either conditioning variables or quantities to be jointly estimated. We demonstrate the approach on two patient-specific models: an aorto-iliac bifurcation with varying stenosis locations and severity, and a coronary arterial tree.
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- North America > United States > California > San Diego County > San Diego (0.04)
- Health & Medicine > Therapeutic Area > Cardiology/Vascular Diseases (1.00)
- Health & Medicine > Diagnostic Medicine (1.00)
- Energy (0.93)
- Information Technology > Artificial Intelligence > Representation & Reasoning (1.00)
- Information Technology > Artificial Intelligence > Machine Learning > Statistical Learning (1.00)
- Information Technology > Sensing and Signal Processing > Image Processing (0.68)
- Information Technology > Artificial Intelligence > Machine Learning > Neural Networks (0.68)
- Europe > Slovenia > Drava > Municipality of Benedikt > Benedikt (0.04)
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- Europe > United Kingdom > England > Cambridgeshire > Cambridge (0.04)
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- Health & Medicine > Therapeutic Area > Oncology (1.00)
- Health & Medicine > Therapeutic Area > Neurology (1.00)
- Health & Medicine > Diagnostic Medicine > Imaging (1.00)
- Health & Medicine > Health Care Technology (0.94)
- Health & Medicine > Therapeutic Area > Oncology (1.00)
- Health & Medicine > Nuclear Medicine (1.00)
- Health & Medicine > Diagnostic Medicine > Imaging (1.00)
- Health & Medicine > Health Care Technology (0.68)
- Information Technology > Artificial Intelligence > Machine Learning > Neural Networks > Deep Learning (1.00)
- Information Technology > Artificial Intelligence > Vision (0.69)
- Information Technology > Sensing and Signal Processing > Image Processing (0.69)
- Information Technology > Artificial Intelligence > Representation & Reasoning (0.68)
- Health & Medicine > Therapeutic Area > Neurology (1.00)
- Health & Medicine > Health Care Technology (0.70)
- North America > United States > California > Los Angeles County > Los Angeles (0.14)
- Oceania > Australia > New South Wales > Sydney (0.04)
SARAMIS: Simulation Assets for Robotic Assisted and Minimally Invasive Surgery
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MedReasoner: Reinforcement Learning Drives Reasoning Grounding from Clinical Thought to Pixel-Level Precision
Yan, Zhonghao, Diao, Muxi, Yang, Yuxuan, Jing, Ruoyan, Xu, Jiayuan, Zhang, Kaizhou, Yang, Lele, Liu, Yanxi, Liang, Kongming, Ma, Zhanyu
Accurately grounding regions of interest (ROIs) is critical for diagnosis and treatment planning in medical imaging. While multimodal large language models (MLLMs) combine visual perception with natural language, current medical-grounding pipelines still rely on supervised fine-tuning with explicit spatial hints, making them ill-equipped to handle the implicit queries common in clinical practice. This work makes three core contributions. We first define Unified Medical Reasoning Grounding (UMRG), a novel vision-language task that demands clinical reasoning and pixel-level grounding. Second, we release U-MRG-14K, a dataset of 14K samples featuring pixel-level masks alongside implicit clinical queries and reasoning traces, spanning 10 modalities, 15 super-categories, and 108 specific categories. Finally, we introduce MedReasoner, a modular framework that distinctly separates reasoning from segmentation: an MLLM reasoner is optimized with reinforcement learning, while a frozen segmentation expert converts spatial prompts into masks, with alignment achieved through format and accuracy rewards. MedReasoner achieves state-of-the-art performance on U-MRG-14K and demonstrates strong generalization to unseen clinical queries, underscoring the significant promise of reinforcement learning for interpretable medical grounding.