PEER: A Comprehensive and Multi-Task Benchmark for Protein Sequence Understanding (Supplementary Material)

For example, the feature of dipeptide " st " is defined by its dipeptide composition ( The Moran feature descriptor defines the distribution of amino acid properties along a protein sequence. It should be noted that there are evident class imbalances in two multi-class classification tasks. Table 1: Balanced metric (weighted F1) compared with accuracy on multi-class classification tasks. We report mean (std) for each experiment. Used as a feature extractor with pre-trained weights frozen.