Notes about the OntoGene Pipeline

In this paper we describe the architecture of the OntoGene Relation mining pipeline and some of its recent applications. With this research overview paper we intend to provide a contribution towards the recently started discussion towards standards for information extraction architectures in the biomedical domain. Our approach delivers domain entities mentioned in each input document, as well as candidate relationships, both ranked according to a confidency score computed by the system. This information is presented to the user through an advanced interface aimed at supporting the process of interactive curation.