Data-Efficient Symbolic Regression via Foundation Model Distillation

Discovering interpretable mathematical equations from observed data (a.k.a. equation discovery or symbolic regression) is a cornerstone of scientific discovery, enabling transparent modeling of physical, biological, and economic systems. While foundation models pre-trained on large-scale equation datasets offer a promising starting point, they often suffer from negative transfer and poor generalization when applied to small, domain-specific datasets. In this paper, we introduce EQUATE (Equation Generation via QUality-Aligned Transfer Embeddings), a data-efficient fine-tuning framework that adapts foundation models for symbolic equation discovery in low-data regimes via distillation. EQUATE combines symbolic-numeric alignment with evaluator-guided embedding optimization, enabling a principled embedding-search-generation paradigm. Our approach reformulates discrete equation search as a continuous optimization task in a shared embedding space, guided by data-equation fitness and simplicity. Experiments across three standard public benchmarks (Feynman, Strogatz, and black-box datasets) demonstrate that EQUATE consistently outperforms state-of-the-art baselines in both accuracy and robustness, while preserving low complexity and fast inference. These results highlight EQUATE as a practical and generalizable solution for data-efficient symbolic regression in foundation model distillation settings.