Enhancing Automatic PT Tagging for MEDLINE Citations Using Transformer-Based Models

This study addresses limitations in the current automated indexing process, which relies on legacy NLP algorithms. We evaluated monolithic multi-label classifiers and binary classifier ensembles to enhance the retrieval of biomedical literature. Results demonstrate the potential of Transformer models to significantly improve PT tagging accuracy, paving the way for scalable, efficient biomedical indexing. Keywords: MEDLINE, MeSH Publication Types, Pre-trained Foundation Models, Natural Language Processing, Machine Learning 1. Introduction The MEDLINE indexed subset of the National Library of Medicine' s ( NLM ' s) PubMed service is a cornerstone of biomedical knowledge, housing millions of citations from journals worldwide. Its significance lies not only in its vast scope but also in its ability to organize and provide efficient access to this wealth of information.