Uncertainty
MolPIF: A Parameter Interpolation Flow Model for Molecule Generation
Jin, Yaowei, Wang, Junjie, Xiang, Wenkai, Cao, Duanhua, Teng, Dan, Fan, Zhehuan, Xiong, Jiacheng, Sheng, Xia, Zeng, Chuanlong, An, Duo, Zheng, Mingyue, Zheng, Shuangjia, Shi, Qian
Bayesian Flow Networks (BFNs) have recently shown impressive performance across diverse chemical tasks, with their success often ascribed to the paradigm of modeling in a low-variance parameter space. However, the Bayesian inference-based strategy imposes limitations on designing more flexible distribution transformation pathways, making it challenging to adapt to diverse data distributions and varied task requirements. Furthermore, the potential for simpler, more efficient parameter-space-based models is unexplored. To address this, we propose a novel Parameter Interpolation Flow model (named PIF) with detailed theoretical foundation, training, and inference procedures. We then develop MolPIF for structure-based drug design, demonstrating its superior performance across diverse metrics compared to baselines. This work validates the effectiveness of parameter-space-based generative modeling paradigm for molecules and offers new perspectives for model design.
Theorem-of-Thought: A Multi-Agent Framework for Abductive, Deductive, and Inductive Reasoning in Language Models
Abdaljalil, Samir, Kurban, Hasan, Qaraqe, Khalid, Serpedin, Erchin
Large language models (LLMs) have shown strong performance across natural language reasoning tasks, yet their reasoning processes remain brittle and difficult to interpret. Prompting techniques like Chain-of-Thought (CoT) enhance reliability by eliciting intermediate reasoning steps or aggregating multiple outputs. However, they lack mechanisms for enforcing logical structure and assessing internal coherence. We introduce Theorem-of-Thought (ToTh), a novel framework that models reasoning as collaboration among three parallel agents, each simulating a distinct mode of inference: abductive, deductive, and inductive. Each agent produces a reasoning trace, which is structured into a formal reasoning graph. To evaluate consistency, we apply Bayesian belief propagation guided by natural language inference (NLI), assigning confidence scores to each step. The most coherent graph is selected to derive the final answer. Experiments on symbolic (WebOfLies) and numerical (MultiArith) reasoning benchmarks show that ToTh consistently outperforms CoT, Self-Consistency, and CoT-Decoding across multiple LLMs, while producing interpretable and logically grounded reasoning chains. Our findings suggest a promising direction for building more robust and cognitively inspired LLM reasoning. The implementation is available at https://github.com/KurbanIntelligenceLab/theorem-of-thought.
Consensus-Driven Active Model Selection
Kay, Justin, Van Horn, Grant, Maji, Subhransu, Sheldon, Daniel, Beery, Sara
The widespread availability of off-the-shelf machine learning models poses a challenge: which model, of the many available candidates, should be chosen for a given data analysis task? This question of model selection is traditionally answered by collecting and annotating a validation dataset -- a costly and time-intensive process. We propose a method for active model selection, using predictions from candidate models to prioritize the labeling of test data points that efficiently differentiate the best candidate. Our method, CODA, performs consensus-driven active model selection by modeling relationships between classifiers, categories, and data points within a probabilistic framework. The framework uses the consensus and disagreement between models in the candidate pool to guide the label acquisition process, and Bayesian inference to update beliefs about which model is best as more information is collected. We validate our approach by curating a collection of 26 benchmark tasks capturing a range of model selection scenarios. CODA outperforms existing methods for active model selection significantly, reducing the annotation effort required to discover the best model by upwards of 70% compared to the previous state-of-the-art. Code and data are available at https://github.com/justinkay/coda.
Simulating Posterior Bayesian Neural Networks with Dependent Weights
Apollonio, Nicola, Franzina, Giovanni, Torrisi, Giovanni Luca
The theoretical study of Bayesian neural networks was initiated by Neal [29] who proved that if a shallow Bayesian neural network is initialized with independent Gaussian parameters (i.e., biases and weights), then the output of the network converges in distribution to a Gaussian process, as the number of neurons grows large ( i.e., in the wide width limit). This result was extended to Bayesian deep neural networks two decades later (see [16, 22, 26]) and only recently it has been made quantitative by the use of the optimal transport theory (see [6] and [33]), by the Stein method for Gaussian approximation (see [3, 4, 8, 13]), and by alternative techniques ([7, 11]). Another promising approach to analyze Bayesian neural networks is through the lens of large deviations. First results in this direction are given in [23]. These findings have been successively generalized in [2, 34]. A different perspective is provided by the so-called mean field analysis of networks (see [27, 15]). The advantage of the Bayesian framework is that it allows to include in the model both prior knowledge and observed data through a prior distribution on network's parameters and a likelihood function, respectively. The emergence of Gaussian processes helped to understand how large neural networks work, how to make them more efficient, and motivated the use of Bayesian regression inference methods, see [22]. However, as noticed by [28] and [21], the connection with Gaussian processes also highlighted the limitations of wide width neural networks with independent and Gaussian distributed weights.
The Incomplete Bridge: How AI Research (Mis)Engages with Psychology
Jiang, Han, Wang, Pengda, Yi, Xiaoyuan, Xie, Xing, Xiao, Ziang
Social sciences have accumulated a rich body of theories and methodologies for investigating the human mind and behaviors, while offering valuable insights into the design and understanding of Artificial Intelligence (AI) systems. Focusing on psychology as a prominent case, this study explores the interdisciplinary synergy between AI and the field by analyzing 1,006 LLM-related papers published in premier AI venues between 2023 and 2025, along with the 2,544 psychology publications they cite. Through our analysis, we identify key patterns of interdisciplinary integration, locate the psychology domains most frequently referenced, and highlight areas that remain underexplored. We further examine how psychology theories/frameworks are operationalized and interpreted, identify common types of misapplication, and offer guidance for more effective incorporation. Our work provides a comprehensive map of interdisciplinary engagement between AI and psychology, thereby facilitating deeper collaboration and advancing AI systems.
Transductive Model Selection under Prior Probability Shift
Volpi, Lorenzo, Moreo, Alejandro, Sebastiani, Fabrizio
Transductive learning is a supervised machine learning task in which, unlike in traditional inductive learning, the unlabelled data that require labelling are a finite set and are available at training time. Similarly to inductive learning contexts, transductive learning contexts may be affected by dataset shift, i.e., may be such that the IID assumption does not hold. We here propose a method, tailored to transductive classification contexts, for performing model selection (i.e., hyperparameter optimisation) when the data exhibit prior probability shift, an important type of dataset shift typical of anti-causal learning problems. In our proposed method the hyperparameters can be optimised directly on the unlabelled data to which the trained classifier must be applied; this is unlike traditional model selection methods, that are based on performing cross-validation on the labelled training data. We provide experimental results that show the benefits brought about by our method.
Accident-Driven Congestion Prediction and Simulation: An Explainable Framework Using Advanced Clustering and Bayesian Networks
Talluri, Kranthi Kumar, Weidl, Galia, Kasuluru, Vaishnavi
Traffic congestion due to uncertainties, such as accidents, is a significant issue in urban areas, as the ripple effect of accidents causes longer delays, increased emissions, and safety concerns. To address this issue, we propose a robust framework for predicting the impact of accidents on congestion. We implement Automated Machine Learning (AutoML)-enhanced Deep Embedding Clustering (DEC) to assign congestion labels to accident data and predict congestion probability using a Bayesian Network (BN). The Simulation of Urban Mobility (SUMO) simulation is utilized to evaluate the correctness of BN predictions using evidence-based scenarios. Results demonstrate that the AutoML-enhanced DEC has outperformed traditional clustering approaches. The performance of the proposed BN model achieved an overall accuracy of 95.6%, indicating its ability to understand the complex relationship of accidents causing congestion. Validation in SUMO with evidence-based scenarios demonstrated that the BN model's prediction of congestion states closely matches those of SUMO, indicating the high reliability of the proposed BN model in ensuring smooth urban mobility.
Proto-EVFL: Enhanced Vertical Federated Learning via Dual Prototype with Extremely Unaligned Data
Guo, Wei, Duan, Yiyang, Hu, Zhaojun, Tong, Yiqi, Zhuang, Fuzhen, Zhang, Xiao, Dong, Jin, Wu, Ruofan, Liu, Tengfei, Sun, Yifan
--In vertical federated learning (VFL), multiple enterprises address aligned sample scarcity by leveraging massive locally unaligned samples to facilitate collaborative learning. However, unaligned samples across different parties in VFL can be extremely class-imbalanced, leading to insufficient feature representation and limited model prediction space. Specifically, class-imbalanced problems consist of intra-party class imbalance and inter-party class imbalance, which can further cause local model bias and feature contribution inconsistency issues, respectively. T o address the above challenges, we propose Proto-EVFL, an enhanced VFL framework via dual prototypes. We first introduce class prototypes for each party to learn relationships between classes in the latent space, allowing the active party to predict unseen classes. We further design a probabilistic dual prototype learning scheme to dynamically select unaligned samples by conditional optimal transport cost with class prior probability. Moreover, a mixed prior guided module guides this selection process by combining local and global class prior probabilities. Finally, we adopt an adaptive gated feature aggregation strategy to mitigate feature contribution inconsistency by dynamically weighting and aggregating local features across different parties. We proved that Proto-EVFL, as the first bi-level optimization framework in VFL, has a convergence rate of 1 / T . Even in a zero-shot scenario with one unseen class, it outperforms baselines by at least 6.97%. NTRODUCTION indicates equal contribution, * represents the corresponding authors Wei Guo, Yiyang Duan and Fuzhen Zhuang are with the School of Artificial Intelligence, Beihang University, Beijing 100083, China (e-mail: { guowei, duanyiyang, zhuangfuzhen }@buaa.edu.cn). Xiao Zhang is with the School of Computer Science and Technology, Shan-dong University, Shandong 266237, China (e-mail: xiaozhang@sdu.edu.cn). Zhaojun Hu is with the Center for Applied Statistics, School of Statistics, Renmin University of China, Beijing 100872, China (e-mail: huzhao-jun@ruc.edu.cn).
Robust Filtering and Learning in State-Space Models: Skewness and Heavy Tails Via Asymmetric Laplace Distribution
Yu, Yifan, Xiu, Shengjie, Palomar, Daniel P.
State-space models are pivotal for dynamic system analysis but often struggle with outlier data that deviates from Gaussian distributions, frequently exhibiting skewness and heavy tails. This paper introduces a robust extension utilizing the asymmetric Laplace distribution, specifically tailored to capture these complex characteristics. We propose an efficient variational Bayes algorithm and a novel single-loop parameter estimation strategy, significantly enhancing the efficiency of the filtering, smoothing, and parameter estimation processes. Our comprehensive experiments demonstrate that our methods provide consistently robust performance across various noise settings without the need for manual hyperparameter adjustments. In stark contrast, existing models generally rely on specific noise conditions and necessitate extensive manual tuning. Moreover, our approach uses far fewer computational resources, thereby validating the model's effectiveness and underscoring its potential for practical applications in fields such as robust control and financial modeling.
Spatial Language Likelihood Grounding Network for Bayesian Fusion of Human-Robot Observations
Sitdhipol, Supawich, Sukprasongdee, Waritwong, Chuangsuwanich, Ekapol, Tse, Rina
Fusing information from human observations can help robots overcome sensing limitations in collaborative tasks. However, an uncertainty-aware fusion framework requires a grounded likelihood representing the uncertainty of human inputs. This paper presents a Feature Pyramid Likelihood Grounding Network (FP-LGN) that grounds spatial language by learning relevant map image features and their relationships with spatial relation semantics. The model is trained as a probability estimator to capture aleatoric uncertainty in human language using three-stage curriculum learning. Results showed that FP-LGN matched expert-designed rules in mean Negative Log-Likelihood (NLL) and demonstrated greater robustness with lower standard deviation. Collaborative sensing results demonstrated that the grounded likelihood successfully enabled uncertainty-aware fusion of heterogeneous human language observations and robot sensor measurements, achieving significant improvements in human-robot collaborative task performance.