Uncertainty
Efficient Causal Structure Learning via Modular Subgraph Integration
Sun, Haixiang, Tian, Pengchao, Zhou, Zihan, Zhang, Jielei, Li, Peiyi, Liu, Andrew L.
Learning causal structures from observational data remains a fundamental yet computationally intensive task, particularly in high-dimensional settings where existing methods face challenges such as the super-exponential growth of the search space and increasing computational demands. To address this, we introduce VISTA (Voting-based Integration of Subgraph Topologies for Acyclicity), a modular framework that decomposes the global causal structure learning problem into local subgraphs based on Markov Blankets. The global integration is achieved through a weighted voting mechanism that penalizes low-support edges via exponential decay, filters unreliable ones with an adaptive threshold, and ensures acyclicity using a Feedback Arc Set (FAS) algorithm. The framework is model-agnostic, imposing no assumptions on the inductive biases of base learners, is compatible with arbitrary data settings without requiring specific structural forms, and fully supports parallelization. We also theoretically establish finite-sample error bounds for VISTA, and prove its asymptotic consistency under mild conditions. Extensive experiments on both synthetic and real datasets consistently demonstrate the effectiveness of VISTA, yielding notable improvements in both accuracy and efficiency over a wide range of base learners.
The Bayesian Geometry of Transformer Attention
Agarwal, Naman, Dalal, Siddhartha R., Misra, Vishal
Transformers often appear to perform Bayesian reasoning in context, but verifying this rigorously has been impossible: natural data lack analytic posteriors, and large models conflate reasoning with memorization. We address this by constructing \emph{Bayesian wind tunnels} -- controlled environments where the true posterior is known in closed form and memorization is provably impossible. In these settings, small transformers reproduce Bayesian posteriors with $10^{-3}$-$10^{-4}$ bit accuracy, while capacity-matched MLPs fail by orders of magnitude, establishing a clear architectural separation. Across two tasks -- bijection elimination and Hidden Markov Model (HMM) state tracking -- we find that transformers implement Bayesian inference through a consistent geometric mechanism: residual streams serve as the belief substrate, feed-forward networks perform the posterior update, and attention provides content-addressable routing. Geometric diagnostics reveal orthogonal key bases, progressive query-key alignment, and a low-dimensional value manifold parameterized by posterior entropy. During training this manifold unfurls while attention patterns remain stable, a \emph{frame-precision dissociation} predicted by recent gradient analyses. Taken together, these results demonstrate that hierarchical attention realizes Bayesian inference by geometric design, explaining both the necessity of attention and the failure of flat architectures. Bayesian wind tunnels provide a foundation for mechanistically connecting small, verifiable systems to reasoning phenomena observed in large language models.
Regime-Adaptive Bayesian Optimization via Dirichlet Process Mixtures of Gaussian Processes
Zhang, Yan, Liu, Xuefeng, Chen, Sipeng, Ranftl, Sascha, Liu, Chong, Li, Shibo
Standard Bayesian Optimization (BO) assumes uniform smoothness across the search space an assumption violated in multi-regime problems such as molecular conformation search through distinct energy basins or drug discovery across heterogeneous molecular scaffolds. A single GP either oversmooths sharp transitions or hallucinates noise in smooth regions, yielding miscalibrated uncertainty. We propose RAMBO, a Dirichlet Process Mixture of Gaussian Processes that automatically discovers latent regimes during optimization, each modeled by an independent GP with locally-optimized hyperparameters. We derive collapsed Gibbs sampling that analytically marginalizes latent functions for efficient inference, and introduce adaptive concentration parameter scheduling for coarse-to-fine regime discovery. Our acquisition functions decompose uncertainty into intra-regime and inter-regime components. Experiments on synthetic benchmarks and real-world applications, including molecular conformer optimization, virtual screening for drug discovery, and fusion reactor design, demonstrate consistent improvements over state-of-the-art baselines on multi-regime objectives.
Classifier Calibration at Scale: An Empirical Study of Model-Agnostic Post-Hoc Methods
Manokhin, Valery, Grรธnhaug, Daniel
We study model-agnostic post-hoc calibration methods intended to improve probabilistic predictions in supervised binary classification on real i.i.d. tabular data, with particular emphasis on conformal and Venn-based approaches that provide distribution-free validity guarantees under exchangeability. We benchmark 21 widely used classifiers, including linear models, SVMs, tree ensembles (CatBoost, XGBoost, LightGBM), and modern tabular neural and foundation models, on binary tasks from the TabArena-v0.1 suite using randomized, stratified five-fold cross-validation with a held-out test fold. Five calibrators; Isotonic regression, Platt scaling, Beta calibration, Venn-Abers predictors, and Pearsonify are trained on a separate calibration split and applied to test predictions. Calibration is evaluated using proper scoring rules (log-loss and Brier score) and diagnostic measures (Spiegelhalter's Z, ECE, and ECI), alongside discrimination (AUC-ROC) and standard classification metrics. Across tasks and architectures, Venn-Abers predictors achieve the largest average reductions in log-loss, followed closely by Beta calibration, while Platt scaling exhibits weaker and less consistent effects. Beta calibration improves log-loss most frequently across tasks, whereas Venn-Abers displays fewer instances of extreme degradation and slightly more instances of extreme improvement. Importantly, we find that commonly used calibration procedures, most notably Platt scaling and isotonic regression, can systematically degrade proper scoring performance for strong modern tabular models. Overall classification performance is often preserved, but calibration effects vary substantially across datasets and architectures, and no method dominates uniformly. In expectation, all methods except Pearsonify slightly increase accuracy, but the effect is marginal, with the largest expected gain about 0.008%.
Empirical Likelihood-Based Fairness Auditing: Distribution-Free Certification and Flagging
Tang, Jie, Xie, Chuanlong, Zeng, Xianli, Zhu, Lixing
Machine learning models in high-stakes applications, such as recidivism prediction and automated personnel selection, often exhibit systematic performance disparities across sensitive subpopulations, raising critical concerns regarding algorithmic bias. Fairness auditing addresses these risks through two primary functions: certification, which verifies adherence to fairness constraints; and flagging, which isolates specific demographic groups experiencing disparate treatment. However, existing auditing techniques are frequently limited by restrictive distributional assumptions or prohibitive computational overhead. We propose a novel empirical likelihood-based (EL) framework that constructs robust statistical measures for model performance disparities. Unlike traditional methods, our approach is non-parametric; the proposed disparity statistics follow asymptotically chi-square or mixed chi-square distributions, ensuring valid inference without assuming underlying data distributions. This framework uses a constrained optimization profile that admits stable numerical solutions, facilitating both large-scale certification and efficient subpopulation discovery. Empirically, the EL methods outperform bootstrap-based approaches, yielding coverage rates closer to nominal levels while reducing computational latency by several orders of magnitude. We demonstrate the practical utility of this framework on the COMPAS dataset, where it successfully flags intersectional biases, specifically identifying a significantly higher positive prediction rate for African-American males under 25 and a systemic under-prediction for Caucasian females relative to the population mean.
Gradient Dynamics of Attention: How Cross-Entropy Sculpts Bayesian Manifolds
Agarwal, Naman, Dalal, Siddhartha R., Misra, Vishal
Transformers empirically perform precise probabilistic reasoning in carefully constructed ``Bayesian wind tunnels'' and in large-scale language models, yet the mechanisms by which gradient-based learning creates the required internal geometry remain opaque. We provide a complete first-order analysis of how cross-entropy training reshapes attention scores and value vectors in a transformer attention head. Our core result is an \emph{advantage-based routing law} for attention scores, \[ \frac{\partial L}{\partial s_{ij}} = ฮฑ_{ij}\bigl(b_{ij}-\mathbb{E}_{ฮฑ_i}[b]\bigr), \qquad b_{ij} := u_i^\top v_j, \] coupled with a \emph{responsibility-weighted update} for values, \[ ฮv_j = -ฮท\sum_i ฮฑ_{ij} u_i, \] where $u_i$ is the upstream gradient at position $i$ and $ฮฑ_{ij}$ are attention weights. These equations induce a positive feedback loop in which routing and content specialize together: queries route more strongly to values that are above-average for their error signal, and those values are pulled toward the queries that use them. We show that this coupled specialization behaves like a two-timescale EM procedure: attention weights implement an E-step (soft responsibilities), while values implement an M-step (responsibility-weighted prototype updates), with queries and keys adjusting the hypothesis frame. Through controlled simulations, including a sticky Markov-chain task where we compare a closed-form EM-style update to standard SGD, we demonstrate that the same gradient dynamics that minimize cross-entropy also sculpt the low-dimensional manifolds identified in our companion work as implementing Bayesian inference. This yields a unified picture in which optimization (gradient flow) gives rise to geometry (Bayesian manifolds), which in turn supports function (in-context probabilistic reasoning).
Vector-Valued Distributional Reinforcement Learning Policy Evaluation: A Hilbert Space Embedding Approach
Mohammadi, Mehrdad, Zheng, Qi, Zhu, Ruoqing
We propose an (offline) multi-dimensional distributional reinforcement learning framework (KE-DRL) that leverages Hilbert space mappings to estimate the kernel mean embedding of the multi-dimensional value distribution under a proposed target policy. In our setting, the state-action variables are multi-dimensional and continuous. By mapping probability measures into a reproducing kernel Hilbert space via kernel mean embeddings, our method replaces Wasserstein metrics with an integral probability metric. This enables efficient estimation in multi-dimensional state-action spaces and reward settings, where direct computation of Wasserstein distances is computationally challenging. Theoretically, we establish contraction properties of the distributional Bellman operator under our proposed metric involving the Matern family of kernels and provide uniform convergence guarantees. Simulations and empirical results demonstrate robust off-policy evaluation and recovery of the kernel mean embedding under mild assumptions, namely, Lipschitz continuity and boundedness of the kernels, highlighting the potential of embedding-based approaches in complex real-world decision-making scenarios and risk evaluation.
Prediction Markets as Bayesian Inverse Problems: Uncertainty Quantification, Identifiability, and Information Gain from Price-Volume Histories under Latent Types
Madrigal-Cianci, Juan Pablo, Maya, Camilo Monsalve, Breakey, Lachlan
Prediction markets are often described as mechanisms that ``aggregate information'' into prices, yet the mapping from dispersed private information to observed market histories is typically noisy, endogenous, and shaped by heterogeneous and strategic participation. This paper formulates prediction markets as Bayesian inverse problems in which the unknown event outcome \(Y\in\{0,1\}\) is inferred from an observed history of market-implied probabilities and traded volumes. We introduce a mechanism-agnostic observation model in log-odds space in which price increments conditional on volume arise from a latent mixture of trader types. The resulting likelihood class encompasses informed and uninformed trading, heavy-tailed microstructure noise, and adversarial or manipulative flow, while requiring only price and volume as observables. Within this framework we define posterior uncertainty quantification for \(Y\), provide identifiability and well-posedness criteria in terms of Kullback--Leibler separation between outcome-conditional increment laws, and derive posterior concentration statements and finite-sample error bounds under general regularity assumptions. We further study stability of posterior odds to perturbations of the observed price--volume path and define realized and expected information gain via the posterior-vs-prior KL divergence and mutual information. The inverse-problem formulation yields explicit diagnostics for regimes in which market histories are informative and stable versus regimes in which inference is ill-posed due to type-composition confounding or outcome--nuisance symmetries. Extensive experiments on synthetic data validate our theoretical predictions regarding posterior concentration rates and identifiability thresholds.
Error Analysis of Bayesian Inverse Problems with Generative Priors
Data-driven methods for the solution of inverse problems have become widely popular in recent years thanks to the rise of machine learning techniques. A popular approach concerns the training of a generative model on additional data to learn a bespoke prior for the problem at hand. In this article we present an analysis for such problems by presenting quantitative error bounds for minimum Wasserstein-2 generative models for the prior. We show that under some assumptions, the error in the posterior due to the generative prior will inherit the same rate as the prior with respect to the Wasserstein-1 distance. We further present numerical experiments that verify that aspects of our error analysis manifests in some benchmarks followed by an elliptic PDE inverse problem where a generative prior is used to model a non-stationary field.
Parametric Mean-Field empirical Bayes in high-dimensional linear regression
In this paper, we consider the problem of parametric empirical Bayes estimation of an i.i.d. prior in high-dimensional Bayesian linear regression, with random design. We obtain the asymptotic distribution of the variational Empirical Bayes (vEB) estimator, which approximately maximizes a variational lower bound of the intractable marginal likelihood. We characterize a sharp phase transition behavior for the vEB estimator -- namely that it is information theoretically optimal (in terms of limiting variance) up to $p=o(n^{2/3})$ while it suffers from a sub-optimal convergence rate in higher dimensions. In the first regime, i.e., when $p=o(n^{2/3})$, we show how the estimated prior can be calibrated to enable valid coordinate-wise and delocalized inference, both under the \emph{empirical Bayes posterior} and the oracle posterior. In the second regime, we propose a debiasing technique as a way to improve the performance of the vEB estimator beyond $p=o(n^{2/3})$. Extensive numerical experiments corroborate our theoretical findings.