Ontologies
EABlock: A Declarative Entity Alignment Block for Knowledge Graph Creation Pipelines
Jozashoori, Samaneh, Sakor, Ahmad, Iglesias, Enrique, Vidal, Maria-Esther
Despite encoding enormous amount of rich and valuable data, existing data sources are mostly created independently, being a significant challenge to their integration. Mapping languages, e.g., RML and R2RML, facilitate declarative specification of the process of applying meta-data and integrating data into a knowledge graph. Mapping rules can also include knowledge extraction functions in addition to expressing correspondences among data sources and a unified schema. Combining mapping rules and functions represents a powerful formalism to specify pipelines for integrating data into a knowledge graph transparently. Surprisingly, these formalisms are not fully adapted, and many knowledge graphs are created by executing ad-hoc programs to pre-process and integrate data. In this paper, we present EABlock, an approach integrating Entity Alignment (EA) as part of RML mapping rules. EABlock includes a block of functions performing entity recognition from textual attributes and link the recognized entities to the corresponding resources in Wikidata, DBpedia, and domain specific thesaurus, e.g., UMLS. EABlock provides agnostic and efficient techniques to evaluate the functions and transfer the mappings to facilitate its application in any RML-compliant engine. We have empirically evaluated EABlock performance, and results indicate that EABlock speeds up knowledge graph creation pipelines that require entity recognition and linking in state-of-the-art RML-compliant engines. EABlock is also publicly available as a tool through a GitHub repository(https://github.com/SDM-TIB/EABlock) and a DOI(https://doi.org/10.5281/zenodo.5779773).
Clinical text mining using the Amazon Comprehend Medical new SNOMED CT API
Mining medical concepts from written clinical text, such as patient encounters, plays an important role in clinical analytics and decision-making applications, such as population analytics for providers, pre-authorization for payers, and adverse-event detection for pharma companies. Medical concepts contain medical conditions, medications, procedures, and other clinical events. Extracting medical concepts is a complicated process due to the specialist knowledge required and the broad use of synonyms in the medical field. Furthermore, to make detected concepts useful for large-scale analytics and decision-making applications, they have to be codified. This is a process where a specialist looks up matching codes from a medical ontology, often containing tens to hundreds of thousands of concepts.
Semantic Construction Grammar: Bridging the NL / Logic Divide
Schneider, Dave, Witbrock, Michael
In this paper, we discuss Semantic Construction Grammar (SCG), a system developed over the past several years to facilitate translation between natural language and logical representations. Crucially, SCG is designed to support a variety of different methods of representation, ranging from those that are fairly close to the NL structure (e.g. so-called 'logical forms'), to those that are quite different from the NL structure, with higher-order and high-arity relations. Semantic constraints and checks on representations are integral to the process of NL understanding with SCG, and are easily carried out due to the SCG's integration with Cyc's Knowledge Base and inference engine.
Wikidated 1.0: An Evolving Knowledge Graph Dataset of Wikidata's Revision History
Schmelzeisen, Lukas, Dima, Corina, Staab, Steffen
Wikidata is the largest general-interest knowledge base that is openly available. It is collaboratively edited by thousands of volunteer editors and has thus evolved considerably since its inception in 2012. In this paper, we present Wikidated 1.0, a dataset of Wikidata's full revision history, which encodes changes between Wikidata revisions as sets of deletions and additions of RDF triples. To the best of our knowledge, it constitutes the first large dataset of an evolving knowledge graph, a recently emerging research subject in the Semantic Web community. We introduce the methodology for generating Wikidated 1.0 from dumps of Wikidata, discuss its implementation and limitations, and present statistical characteristics of the dataset.
Towards automation of threat modeling based on a semantic model of attack patterns and weaknesses
This works considers challenges of building and usage a formal knowledge base (model), which unites the ATT&CK, CAPEC, CWE, CVE security enumerations. The proposed model can be used to learn relations between attack techniques, attack pattern, weaknesses, and vulnerabilities in order to build various threat landscapes, in particular, for threat modeling. The model is created as an ontology with freely available datasets in the OWL and RDF formats. The use of ontologies is an alternative of structural and graph based approaches to integrate the security enumerations. In this work we consider an approach of threat modeling with the data components of ATT&CK based on the knowledge base and an ontology driven threat modeling framework. Also, some evaluations are made, how it can be possible to use the ontological approach of threat modeling and which challenges this can be faced.
Prediction of Adverse Biological Effects of Chemicals Using Knowledge Graph Embeddings
Myklebust, Erik B., Jimรฉnez-Ruiz, Ernesto, Chen, Jiaoyan, Wolf, Raoul, Tollefsen, Knut Erik
We have created a knowledge graph based on major data sources used in ecotoxicological risk assessment. We have applied this knowledge graph to an important task in risk assessment, namely chemical effect prediction. We have evaluated nine knowledge graph embedding models from a selection of geometric, decomposition, and convolutional models on this prediction task. We show that using knowledge graph embeddings can increase the accuracy of effect prediction with neural networks. Furthermore, we have implemented a fine-tuning architecture which adapts the knowledge graph embeddings to the effect prediction task and leads to a better performance. Finally, we evaluate certain characteristics of the knowledge graph embedding models to shed light on the individual model performance.
Survey on English Entity Linking on Wikidata
Mรถller, Cedric, Lehmann, Jens, Usbeck, Ricardo
Wikidata is a frequently updated, community-driven, and multilingual knowledge graph. Hence, Wikidata is an attractive basis for Entity Linking, which is evident by the recent increase in published papers. This survey focuses on four subjects: (1) Which Wikidata Entity Linking datasets exist, how widely used are they and how are they constructed? (2) Do the characteristics of Wikidata matter for the design of Entity Linking datasets and if so, how? (3) How do current Entity Linking approaches exploit the specific characteristics of Wikidata? (4) Which Wikidata characteristics are unexploited by existing Entity Linking approaches? This survey reveals that current Wikidata-specific Entity Linking datasets do not differ in their annotation scheme from schemes for other knowledge graphs like DBpedia. Thus, the potential for multilingual and time-dependent datasets, naturally suited for Wikidata, is not lifted. Furthermore, we show that most Entity Linking approaches use Wikidata in the same way as any other knowledge graph missing the chance to leverage Wikidata-specific characteristics to increase quality. Almost all approaches employ specific properties like labels and sometimes descriptions but ignore characteristics such as the hyper-relational structure. Hence, there is still room for improvement, for example, by including hyper-relational graph embeddings or type information. Many approaches also include information from Wikipedia, which is easily combinable with Wikidata and provides valuable textual information, which Wikidata lacks.
Combining Sub-Symbolic and Symbolic Methods for Explainability
Himmelhuber, Anna, Grimm, Stephan, Zillner, Sonja, Joblin, Mitchell, Ringsquandl, Martin, Runkler, Thomas
A number of sub-symbolic approaches have been developed to provide insights into the GNN decision making process. These are first important steps on the way to explainability, but the generated explanations are often hard to understand for users that are not AI experts. To overcome this problem, we introduce a conceptual approach combining sub-symbolic and symbolic methods for human-centric explanations, that incorporate domain knowledge and causality. We furthermore introduce the notion of fidelity as a metric for evaluating how close the explanation is to the GNN's internal decision making process. The evaluation with a chemical dataset and ontology shows the explanatory value and reliability of our method.
A Review of SHACL: From Data Validation to Schema Reasoning for RDF Graphs
Pareti, Paolo, Konstantinidis, George
We present an introduction and a review of the Shapes Constraint Language (SHACL), the W3C recommendation language for validating RDF data. A SHACL document describes a set of constraints on RDF nodes, and a graph is valid with respect to the document if its nodes satisfy these constraints. We revisit the basic concepts of the language, its constructs and components and their interaction. We review the different formal frameworks used to study this language and the different semantics proposed. We examine a number of related problems, from containment and satisfiability to the interaction of SHACL with inference rules, and exhibit how different modellings of the language are useful for different problems. We also cover practical aspects of SHACL, discussing its implementations and state of adoption, to present a holistic review useful to practitioners and theoreticians alike.
McLaren partners with AI specialist for performance optimization
McLaren Racing has announced a new partnership with AI cloud platform developer DataRobot, which offers a unified platform that reportedly allows organizations to unlock the full potential of AI. Under the partnership, DataRobot's AI cloud technology platform will be integrated into the McLaren Racing infrastructure, delivering AI-powered predictions and insights to maximize performance and optimize simulations. Zak Brown, CEO of McLaren Racing, commented, "DataRobot is a leader in its field, bringing its innovative technology and platform to top businesses around the globe. McLaren Racing continues to lead in innovation and technology, and partnerships with the likes of DataRobot allow us to progress, improve and support our team in our ongoing push for optimum performance. We are delighted to welcome DataRobot as they join our partner family for the Qatar Grand Prix this weekend."