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RadLing: Towards Efficient Radiology Report Understanding

arXiv.org Artificial Intelligence

Most natural language tasks in the radiology domain use language models pre-trained on biomedical corpus. There are few pretrained language models trained specifically for radiology, and fewer still that have been trained in a low data setting and gone on to produce comparable results in fine-tuning tasks. We present RadLing, a continuously pretrained language model using Electra-small (Clark et al., 2020) architecture, trained using over 500K radiology reports, that can compete with state-of-the-art results for fine tuning tasks in radiology domain. Our main contribution in this paper is knowledge-aware masking which is a taxonomic knowledge-assisted pretraining task that dynamically masks tokens to inject knowledge during pretraining. In addition, we also introduce an knowledge base-aided vocabulary extension to adapt the general tokenization vocabulary to radiology domain.


Addressing Domain Shift via Knowledge Space Sharing for Generalized Zero-Shot Industrial Fault Diagnosis

arXiv.org Artificial Intelligence

Fault diagnosis is a critical aspect of industrial safety, and supervised industrial fault diagnosis has been extensively researched. However, obtaining fault samples of all categories for model training can be challenging due to cost and safety concerns. As a result, the generalized zero-shot industrial fault diagnosis has gained attention as it aims to diagnose both seen and unseen faults. Nevertheless, the lack of unseen fault data for training poses a challenging domain shift problem (DSP), where unseen faults are often identified as seen faults. In this article, we propose a knowledge space sharing (KSS) model to address the DSP in the generalized zero-shot industrial fault diagnosis task. The KSS model includes a generation mechanism (KSS-G) and a discrimination mechanism (KSS-D). KSS-G generates samples for rare faults by recombining transferable attribute features extracted from seen samples under the guidance of auxiliary knowledge. KSS-D is trained in a supervised way with the help of generated samples, which aims to address the DSP by modeling seen categories in the knowledge space. KSS-D avoids misclassifying rare faults as seen faults and identifies seen fault samples. We conduct generalized zero-shot diagnosis experiments on the benchmark Tennessee-Eastman process, and our results show that our approach outperforms state-of-the-art methods for the generalized zero-shot industrial fault diagnosis problem.


Exploring Partial Knowledge Base Inference in Biomedical Entity Linking

arXiv.org Artificial Intelligence

Biomedical entity linking (EL) consists of named entity recognition (NER) and named entity disambiguation (NED). EL models are trained on corpora labeled by a predefined KB. However, it is a common scenario that only entities within a subset of the KB are precious to stakeholders. We name this scenario partial knowledge base inference: training an EL model with one KB and inferring on the part of it without further training. In this work, we give a detailed definition and evaluation procedures for this practically valuable but significantly understudied scenario and evaluate methods from three representative EL paradigms. We construct partial KB inference benchmarks and witness a catastrophic degradation in EL performance due to dramatically precision drop. Our findings reveal these EL paradigms can not correctly handle unlinkable mentions (NIL), so they are not robust to partial KB inference. We also propose two simple-and-effective redemption methods to combat the NIL issue with little computational overhead. Codes are released at https://github.com/Yuanhy1997/PartialKB-EL.


Federated Domain Generalization: A Survey

arXiv.org Artificial Intelligence

Machine learning typically relies on the assumption that training and testing distributions are identical and that data is centrally stored for training and testing. However, in real-world scenarios, distributions may differ significantly and data is often distributed across different devices, organizations, or edge nodes. Consequently, it is imperative to develop models that can effectively generalize to unseen distributions where data is distributed across different domains. In response to this challenge, there has been a surge of interest in federated domain generalization (FDG) in recent years. FDG combines the strengths of federated learning (FL) and domain generalization (DG) techniques to enable multiple source domains to collaboratively learn a model capable of directly generalizing to unseen domains while preserving data privacy. However, generalizing the federated model under domain shifts is a technically challenging problem that has received scant attention in the research area so far. This paper presents the first survey of recent advances in this area. Initially, we discuss the development process from traditional machine learning to domain adaptation and domain generalization, leading to FDG as well as provide the corresponding formal definition. Then, we categorize recent methodologies into four classes: federated domain alignment, data manipulation, learning strategies, and aggregation optimization, and present suitable algorithms in detail for each category. Next, we introduce commonly used datasets, applications, evaluations, and benchmarks. Finally, we conclude this survey by providing some potential research topics for the future.


Do intermediate feature coalitions aid explainability of black-box models?

arXiv.org Artificial Intelligence

This work introduces the notion of intermediate concepts based on levels structure to aid explainability for black-box models. The levels structure is a hierarchical structure in which each level corresponds to features of a dataset (i.e., a player-set partition). The level of coarseness increases from the trivial set, which only comprises singletons, to the set, which only contains the grand coalition. In addition, it is possible to establish meronomies, i.e., part-whole relationships, via a domain expert that can be utilised to generate explanations at an abstract level. We illustrate the usability of this approach in a real-world car model example and the Titanic dataset, where intermediate concepts aid in explainability at different levels of abstraction.


BertNet: Harvesting Knowledge Graphs with Arbitrary Relations from Pretrained Language Models

arXiv.org Artificial Intelligence

It is crucial to automatically construct knowledge graphs (KGs) of diverse new relations to support knowledge discovery and broad applications. Previous KG construction methods, based on either crowdsourcing or text mining, are often limited to a small predefined set of relations due to manual cost or restrictions in text corpus. Recent research proposed to use pretrained language models (LMs) as implicit knowledge bases that accept knowledge queries with prompts. Yet, the implicit knowledge lacks many desirable properties of a full-scale symbolic KG, such as easy access, navigation, editing, and quality assurance. In this paper, we propose a new approach of harvesting massive KGs of arbitrary relations from pretrained LMs. With minimal input of a relation definition (a prompt and a few shot of example entity pairs), the approach efficiently searches in the vast entity pair space to extract diverse accurate knowledge of the desired relation. We develop an effective search-and-rescore mechanism for improved efficiency and accuracy. We deploy the approach to harvest KGs of over 400 new relations from different LMs. Extensive human and automatic evaluations show our approach manages to extract diverse accurate knowledge, including tuples of complex relations (e.g., "A is capable of but not good at B"). The resulting KGs as a symbolic interpretation of the source LMs also reveal new insights into the LMs' knowledge capacities.


A Surrogate Model Framework for Explainable Autonomous Behaviour

arXiv.org Artificial Intelligence

Abstract--Adoption and deployment of robotic and autonomous systems in industry are currently hindered by the lack of transparency, required for safety and accountability. Methods for providing explanations are needed that are agnostic to the underlying autonomous system and easily updated. Furthermore, different stakeholders with varying levels of expertise, will require different levels of information. In this work, we use surrogate models to provide transparency as to the underlying policies for behaviour activation. We show that these surrogate models can effectively break down autonomous agents' behaviour into explainable components for use in natural language explanations.


Sensor Fault Detection and Compensation with Performance Prescription for Robotic Manipulators

arXiv.org Artificial Intelligence

This paper focuses on sensor fault detection and compensation for robotic manipulators. The proposed method features a new adaptive observer and a new terminal sliding mode control law established on a second-order integral sliding surface. The method enables sensor fault detection without the need to impose known bounds on fault value and/or its derivative. It also enables fast and fixed-time fault-tolerant control whose performance can be prescribed beforehand by defining funnel bounds on the tracking error. The ultimate boundedness of the estimation errors for the proposed observer and the fixed-time stability of the control system are shown using Lyapunov stability analysis. The effectiveness of the proposed method is verified using numerical simulations on two different robotic manipulators, and the results are compared with existing methods. Our results demonstrate performance gains obtained by the proposed method compared to the existing results.


Implementation of a framework for deploying AI inference engines in FPGAs

arXiv.org Artificial Intelligence

The LCLS2 Free Electron Laser FEL will generate xray pulses to beamline experiments at up to 1Mhz These experimentals will require new ultrahigh rate UHR detectors that can operate at rates above 100 kHz and generate data throughputs upwards of 1 TBs a data velocity which requires prohibitively large investments in storage infrastructure Machine Learning has demonstrated the potential to digest large datasets to extract relevant insights however current implementations show latencies that are too high for realtime data reduction objectives SLAC has endeavored on the creation of a software framework which translates MLs structures for deployment on Field Programmable Gate Arrays FPGAs deployed at the Edge of the data chain close to the instrumentation This framework leverages Xilinxs HLS framework presenting an API modeled after the open source Keras interface to the TensorFlow library This SLAC Neural Network Library SNL framework is designed with a streaming data approach optimizing the data flow between layers while minimizing the buffer data buffering requirements The goal is to ensure the highest possible framerate while keeping the maximum latency constrained to the needs of the experiment Our framework is designed to ensure the RTL implementation of the network layers supporting full redeployment of weights and biases without requiring resynthesis after training The ability to reduce the precision of the implemented networks through quantization is necessary to optimize the use of both DSP and memory resources in the FPGA We currently have a preliminary version of the toolset and are experimenting with both general purpose example networks and networks being designed for specific LCLS2 experiments.


Less Likely Brainstorming: Using Language Models to Generate Alternative Hypotheses

arXiv.org Artificial Intelligence

A human decision-maker benefits the most from an AI assistant that corrects for their biases. For problems such as generating interpretation of a radiology report given findings, a system predicting only highly likely outcomes may be less useful, where such outcomes are already obvious to the user. To alleviate biases in human decision-making, it is worth considering a broad differential diagnosis, going beyond the most likely options. We introduce a new task, "less likely brainstorming," that asks a model to generate outputs that humans think are relevant but less likely to happen. We explore the task in two settings: a brain MRI interpretation generation setting and an everyday commonsense reasoning setting. We found that a baseline approach of training with less likely hypotheses as targets generates outputs that humans evaluate as either likely or irrelevant nearly half of the time; standard MLE training is not effective. To tackle this problem, we propose a controlled text generation method that uses a novel contrastive learning strategy to encourage models to differentiate between generating likely and less likely outputs according to humans. We compare our method with several state-of-the-art controlled text generation models via automatic and human evaluations and show that our models' capability of generating less likely outputs is improved.