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 Statistical Learning


Improving annotator selection in Active Learning using a mood and fatigue-aware Recommender System

arXiv.org Artificial Intelligence

This study centers on overcoming the challenge of selecting the best annotators for each query in Active Learning (AL), with the objective of minimizing misclassifications. AL recognizes the challenges related to cost and time when acquiring labeled data, and decreases the number of labeled data needed. Nevertheless, there is still the necessity to reduce annotation errors, aiming to be as efficient as possible, to achieve the expected accuracy faster. Most strategies for query-annotator pairs do not consider internal factors that affect productivity, such as mood, attention, motivation, and fatigue levels. This work addresses this gap in the existing literature, by not only considering how the internal factors influence annotators (mood and fatigue levels) but also presenting a new query-annotator pair strategy, using a Knowledge-Based Recommendation System (RS). The RS ranks the available annotators, allowing to choose one or more to label the queried instance using their past accuracy values, and their mood and fatigue levels, as well as information about the instance queried. This work bases itself on existing literature on mood and fatigue influence on human performance, simulating annotators in a realistic manner, and predicting their performance with the RS. The results show that considering past accuracy values, as well as mood and fatigue levels reduces the number of annotation errors made by the annotators, and the uncertainty of the model through its training, when compared to not using internal factors. Accuracy and F1-score values were also better in the proposed approach, despite not being as substantial as the aforementioned. The methodologies and findings presented in this study begin to explore the open challenge of human cognitive factors affecting AL.


Formal Bayesian Transfer Learning via the Total Risk Prior

arXiv.org Machine Learning

In analyses with severe data-limitations, augmenting the target dataset with information from ancillary datasets in the application domain, called source datasets, can lead to significantly improved statistical procedures. However, existing methods for this transfer learning struggle to deal with situations where the source datasets are also limited and not guaranteed to be well-aligned with the target dataset. A typical strategy is to use the empirical loss minimizer on the source data as a prior mean for the target parameters, which places the estimation of source parameters outside of the Bayesian formalism. Our key conceptual contribution is to use a risk minimizer conditional on source parameters instead. This allows us to construct a single joint prior distribution for all parameters from the source datasets as well as the target dataset. As a consequence, we benefit from full Bayesian uncertainty quantification and can perform model averaging via Gibbs sampling over indicator variables governing the inclusion of each source dataset. We show how a particular instantiation of our prior leads to a Bayesian Lasso in a transformed coordinate system and discuss computational techniques to scale our approach to moderately sized datasets. We also demonstrate that recently proposed minimax-frequentist transfer learning techniques may be viewed as an approximate Maximum a Posteriori approach to our model. Finally, we demonstrate superior predictive performance relative to the frequentist baseline on a genetics application, especially when the source data are limited.


Barycentric subspace analysis of network-valued data

arXiv.org Machine Learning

Certain data are naturally modeled by networks or weighted graphs, be they arterial networks or mobility networks. When there is no canonical labeling of the nodes across the dataset, we talk about unlabeled networks. In this paper, we focus on the question of dimensionality reduction for this type of data. More specifically, we address the issue of interpreting the feature subspace constructed by dimensionality reduction methods. Most existing methods for network-valued data are derived from principal component analysis (PCA) and therefore rely on subspaces generated by a set of vectors, which we identify as a major limitation in terms of interpretability. Instead, we propose to implement the method called barycentric subspace analysis (BSA), which relies on subspaces generated by a set of points. In order to provide a computationally feasible framework for BSA, we introduce a novel embedding for unlabeled networks where we replace their usual representation by equivalence classes of isomorphic networks with that by equivalence classes of cospectral networks. We then illustrate BSA on simulated and real-world datasets, and compare it to tangent PCA.


AdaptHetero: Machine Learning Interpretation-Driven Subgroup Adaptation for EHR-Based Clinical Prediction

arXiv.org Machine Learning

However, the in t rinsic complexity and heterogeneity of EHR data limit its effectiveness in guiding subgroup - specific modelin g . W e propose AdaptHetero, a novel MLI - driven framework that transforms interpretability insights into actionable guidance for tailor ing model training and evaluation across subpopulations within individual hospital systems . E valuated on th ree large - scale EH R datasets -- GOSSIS - 1 - eICU, WiDS, and MIMIC - IV -- AdaptHetero consistently identif ies heterogeneous model behaviors in predicting ICU mortality, in - hospital death, and hidden hypoxemia. By integrating SHAP - based interpretation and unsupervised clustering, the framework enhances the identification of clinicall y meaningful subgroup - specific characteristics, leading to improved predictive performance and optimized clinical deployment . Introduction Machine learning interpretation (MLI) techniques are increasingly leveraged in the analysis of electronic health records (EHRs) to reveal latent clinical patterns and to support trustworthy, actionable decision - making in high - stakes healthcare settings .


Overcoming error-in-variable problem in data-driven model discovery by orthogonal distance regression

arXiv.org Machine Learning

Despite the recent proliferation of machine learning methods like SINDy that promise automatic discovery of governing equations from time-series data, there remain significant challenges to discovering models from noisy datasets. One reason is that the linear regression underlying these methods assumes that all noise resides in the training target (the regressand), which is the time derivative, whereas the measurement noise is in the states (the regressors). Recent methods like modified-SINDy and DySMHO address this error-in-variable problem by leveraging information from the model's temporal evolution, but they are also imposing the equation as a hard constraint, which effectively assumes no error in the regressand. Without relaxation, this hard constraint prevents assimilation of data longer than Lyapunov time. Instead, the fulfilment of the model equation should be treated as a soft constraint to account for the small yet critical error introduced by numerical truncation. The uncertainties in both the regressor and the regressand invite the use of orthogonal distance regression (ODR). By incorporating ODR with the Bayesian framework for model selection, we introduce a novel method for model discovery, termed ODR-BINDy, and assess its performance against current SINDy variants using the Lorenz63, Rossler, and Van Der Pol systems as case studies. Our findings indicate that ODR-BINDy consistently outperforms all existing methods in recovering the correct model from sparse and noisy datasets. For instance, our ODR-BINDy method reliably recovers the Lorenz63 equation from data with noise contamination levels of up to 30%.


Spatiodynamic inference using vision-based generative modelling

arXiv.org Machine Learning

Biological systems commonly exhibit complex spatiotemporal patterns whose underlying generative mechanisms pose a significant analytical challenge. Traditional approaches to spatiodynamic inference rely on dimensionality reduction through summary statistics, which sacrifice complexity and interdependent structure intrinsic to these data in favor of parameter identifiability. This imposes a fundamental constraint on reliably extracting mechanistic insights from spatiotemporal data, highlighting the need for analytical frameworks that preserve the full richness of these dynamical systems. To address this, we developed a simulation-based inference framework that employs vision transformer-driven variational encoding to generate compact representations of the data, exploiting the inherent contextual dependencies. These representations are subsequently integrated into a likelihood-free Bayesian approach for parameter inference. The central idea is to construct a fine-grained, structured mesh of latent representations from simulated dynamics through systematic exploration of the parameter space. This encoded mesh of latent embeddings then serves as a reference map for retrieving parameter values that correspond to observed data. By integrating generative modeling with Bayesian principles, our approach provides a unified inference framework to identify both spatial and temporal patterns that manifest in multivariate dynamical systems.


Scaled Beta Models and Feature Dilution for Dynamic Ticket Pricing

arXiv.org Machine Learning

A novel approach is presented for identifying distinct signatures of performing acts in the secondary ticket resale market by analyzing dynamic pricing distributions. Using a newly curated, time series dataset from the SeatGeek API, we model ticket pricing distributions as scaled Beta distributions. This enables accurate parameter estimation from incomplete statistical data using a hybrid of quantile matching and the method of moments. Incorporating the estimated $ฮฑ$ and $ฮฒ$ parameters into Random Forest classifiers significantly improves pairwise artist classification accuracy, demonstrating the unique economic signatures in event pricing data. Additionally, we provide theoretical and empirical evidence that incorporating zero-variance (constant-value) features into Random Forest models acts as an implicit regularizer, enhancing feature variety and robustness. This regularization promotes deeper, more varied trees in the ensemble, improving the bias-variance tradeoff and mitigating overfitting to dominant features. These findings are validated on both the new ticket pricing dataset and the standard UCI ML handwritten digits dataset.


Optimised Feature Subset Selection via Simulated Annealing

arXiv.org Machine Learning

We introduce SA-FDR, a novel algorithm for $\ell_0$-norm feature selection that considers this task as a combinatorial optimisation problem and solves it by using simulated annealing to perform a global search over the space of feature subsets. The optimisation is guided by the Fisher discriminant ratio, which we use as a computationally efficient proxy for model quality in classification tasks. Our experiments, conducted on datasets with up to hundreds of thousands of samples and hundreds of features, demonstrate that SA-FDR consistently selects more compact feature subsets while achieving a high predictive accuracy. This ability to recover informative yet minimal sets of features stems from its capacity to capture inter-feature dependencies often missed by greedy optimisation approaches. As a result, SA-FDR provides a flexible and effective solution for designing interpretable models in high-dimensional settings, particularly when model sparsity, interpretability, and performance are crucial.


Incorporating structural uncertainty in causal decision making

arXiv.org Artificial Intelligence

Practitioners making decisions based on causal effects typically ignore structural uncertainty. We analyze when this uncertainty is consequential enough to warrant methodological solutions (Bayesian model averaging over competing causal structures). Focusing on bivariate relationships ($X \rightarrow Y$ vs. $X \leftarrow Y$), we establish that model averaging is beneficial when: (1) structural uncertainty is moderate to high, (2) causal effects differ substantially between structures, and (3) loss functions are sufficiently sensitive to the size of the causal effect. We prove optimality results of our suggested methodological solution under regularity conditions and demonstrate through simulations that modern causal discovery methods can provide, within limits, the necessary quantification. Our framework complements existing robust causal inference approaches by addressing a distinct source of uncertainty typically overlooked in practice.


DepMicroDiff: Diffusion-Based Dependency-Aware Multimodal Imputation for Microbiome Data

arXiv.org Artificial Intelligence

--Microbiome data analysis is essential for understanding host health and disease, yet its inherent sparsity and noise pose major challenges for accurate imputation, hindering downstream tasks such as biomarker discovery. Existing imputation methods, including recent diffusion-based models, often fail to capture the complex interdependencies between microbial taxa and overlook contextual metadata that can inform imputation. We introduce DepMicroDiff, a novel framework that combines diffusion-based generative modeling with a Dependency-A ware Transformer (DA T) to explicitly capture both mutual pairwise dependencies and autoregressive relationships. DepMicroDiff is further enhanced by V AE-based pretraining across diverse cancer datasets and conditioning on patient metadata encoded via a large language model (LLM). Experiments on TCGA microbiome datasets show that DepMicroDiff substantially outperforms state-of-the-art baselines, achieving higher Pearson correlation (up to 0.712), cosine similarity (up to 0.812), and lower RMSE and MAE across multiple cancer types, demonstrating its robustness and generalizability for microbiome imputation. Microbiome data analysis plays a critical role in understanding host health, disease progression, and therapeutic response, particularly in contexts such as cancer progression, gut-brain interactions, and immunotherapy [1]. However, mi-crobiome datasets, derived from 16S rRNA or metagenomic sequencing, are notoriously sparse and noisy due to limitations in sequencing technologies, biological variability, and compositional constraints.