The rapid growth of scientific literature demands efficient methods to organize and synthesize research findings. Existing taxonomy construction methods, leveraging unsupervised clustering or direct prompting of large language models (LLMs), often lack coherence and granularity. We propose a novel context-aware hierarchical taxonomy generation framework that integrates LLM-guided multi-aspect encoding with dynamic clustering. Our method leverages LLMs to identify key aspects of each paper (e.g., methodology, dataset, evaluation) and generates aspect-specific paper summaries, which are then encoded and clustered along each aspect to form a coherent hierarchy. In addition, we introduce a new evaluation benchmark of 156 expert-crafted taxonomies encompassing 11.6k papers, providing the first naturally annotated dataset for this task. Experimental results demonstrate that our method significantly outperforms prior approaches, achieving state-of-the-art performance in taxonomy coherence, granularity, and interpretability.

The study on architecture and parameter characteristics remains the hot topic in the research of large language models. In this paper we concern with the characteristics of weight which are used to analyze the correlations and differences between models. Two kinds of vectors-standard deviation vector and clustering vector-are proposed to describe features of models. In the first case, the weights are assumed to follow normal distribution. The standard deviation values of projection matrices are normalized to form Standard-Deviation Vector, representing the distribution characteristics of models. In the second case, the singular values from each weight projection matrix are extracted and grouped by K-Means algorithm. The grouped data with the same type matrix are combined as Clustering Vector to represent the correlation characteristics of models' weights. The study reveals that these two vectors can effectively distinguish between different models and clearly show the similarities among models of the same family. Moreover, after conducting LoRA fine-tuning with different datasets and models, it is found that the distribution of weights represented by standard deviation vector is directly influenced by the dataset, but the correlations between different weights represented by clustering vector remain unaffected and maintain a high consistency with the pre-trained model.

Computational models provide crucial insights into complex biological processes such as cancer evolution, but their mechanistic nature often makes them nonlinear and parameter-rich, complicating calibration. We systematically evaluate parameter probability distributions in cell migration models using Bayesian calibration across four complementary strategies: parametric and surrogate models, each with and without explicit model discrepancy. This approach enables joint analysis of parameter uncertainty, predictive performance, and interpretability. Applied to a real data experiment of glioblastoma progression in microfluidic devices, surrogate models achieve higher computational efficiency and predictive accuracy, whereas parametric models yield more reliable parameter estimates due to their mechanistic grounding. Incorporating model discrepancy exposes structural limitations, clarifying where model refinement is necessary. Together, these comparisons offer practical guidance for calibrating and improving computational models of complex biological systems.

The well-known graph-based clustering methods, including spectral clustering, symmetric non-negative matrix factorization, and doubly stochastic normalization, can be viewed as relaxations of the kernel $k$-means approach. However, we posit that these methods excessively relax their inherent low-rank, nonnegative, doubly stochastic, and orthonormal constraints to ensure numerical feasibility, potentially limiting their clustering efficacy. In this paper, guided by our theoretical analyses, we propose \textbf{Lo}w-\textbf{R}ank \textbf{D}oubly stochastic clustering (\textbf{LoRD}), a model that only relaxes the orthonormal constraint to derive a probabilistic clustering results. Furthermore, we theoretically establish the equivalence between orthogonality and block diagonality under the doubly stochastic constraint. By integrating \textbf{B}lock diagonal regularization into LoRD, expressed as the maximization of the Frobenius norm, we propose \textbf{B-LoRD}, which further enhances the clustering performance. To ensure numerical solvability, we transform the non-convex doubly stochastic constraint into a linear convex constraint through the introduction of a class probability parameter. We further theoretically demonstrate the gradient Lipschitz continuity of our LoRD and B-LoRD enables the proposal of a globally convergent projected gradient descent algorithm for their optimization. Extensive experiments validate the effectiveness of our approaches. The code is publicly available at https://github.com/lwl-learning/LoRD.

Deep neural networks has been increasingly applied in fault diagnostics, where it uses historical data to capture systems behavior, bypassing the need for high-fidelity physical models. However, despite their competence in prediction tasks, these models often struggle with the evaluation of their confidence. This matter is particularly important in consistency-based diagnosis where decision logic is highly sensitive to false alarms. To address this challenge, this work presents a diagnostic framework that uses ensemble probabilistic machine learning to improve diagnostic characteristics of data driven consistency based diagnosis by quantifying and automating the prediction uncertainty. The proposed method is evaluated across several case studies using both ablation and comparative analyses, showing consistent improvements across a range of diagnostic metrics.

We study nonstationary newsvendor problems under nonparametric demand models and general distributional measures of nonstationarity, addressing the practical challenges of unknown degree of nonstationarity and demand censoring. We propose a novel distributional-detection-and-restart framework for learning in nonstationary environments, and instantiate it through two efficient algorithms for the uncensored and censored demand settings. The algorithms are fully adaptive, requiring no prior knowledge of the degree and type of nonstationarity, and offer a flexible yet powerful approach to handling both abrupt and gradual changes in nonstationary environments. We establish a comprehensive optimality theory for our algorithms by deriving matching regret upper and lower bounds under both general and refined structural conditions with nontrivial proof techniques that are of independent interest. Numerical experiments using real-world datasets, including nurse staffing data for emergency departments and COVID-19 test demand data, showcase the algorithms' superior and robust empirical performance. While motivated by the newsvendor problem, the distributional-detection-and-restart framework applies broadly to a wide class of nonstationary stochastic optimization problems. Managerially, our framework provides a practical, easy-to-deploy, and theoretically grounded solution for decision-making under nonstationarity.

High-dimensional imaging of neural activity, such as widefield calcium and functional ultrasound imaging, provide a rich source of information for understanding the relationship between brain activity and behavior. Accurately modeling neural dynamics in these modalities is crucial for understanding this relationship but is hindered by the high-dimensionality, complex spatiotemporal dependencies, and prevalent behaviorally irrelevant dynamics in these modalities. Existing dynamical models often employ preprocessing steps to obtain low-dimensional representations from neural image modalities. However, this process can discard behaviorally relevant information and miss spatiotemporal structure. We propose SBIND, a novel data-driven deep learning framework to model spatiotemporal dependencies in neural images and disentangle their behaviorally relevant dynamics from other neural dynamics. We validate SBIND on widefield imaging datasets, and show its extension to functional ultrasound imaging, a recent modality whose dynamical modeling has largely remained unexplored. We find that our model effectively identifies both local and long-range spatial dependencies across the brain while also dissociating behaviorally relevant neural dynamics. Doing so, SBIND outperforms existing models in neural-behavioral prediction. Overall, SBIND provides a versatile tool for investigating the neural mechanisms underlying behavior using imaging modalities.

Embedding vectors are widely used for representing unstructured data and searching through it for semantically similar items. However, the large size of these vectors, due to their high-dimensionality, creates problems for modern vector search techniques: retrieving large vectors from memory/storage is expensive and their footprint is costly. In this work, we present NVQ (non-uniform vector quantization), a new vector compression technique that is computationally and spatially efficient in the high-fidelity regime. The core in NVQ is to use novel parsimonious and computationally efficient nonlinearities for building non-uniform vector quantizers. Critically, these quantizers are \emph{individually} learned for each indexed vector. Our experimental results show that NVQ exhibits improved accuracy compared to the state of the art with a minimal computational cost.

This paper proposes GluMind, a transformer-based multimodal framework designed for continual and long-term blood glucose forecasting. GluMind devises two attention mechanisms, including cross-attention and multi-scale attention, which operate in parallel and deliver accurate predictive performance. Cross-attention effectively integrates blood glucose data with other physiological and behavioral signals such as activity, stress, and heart rate, addressing challenges associated with varying sampling rates and their adverse impacts on robust prediction. Moreover, the multi-scale attention mechanism captures long-range temporal dependencies. To mitigate catastrophic forgetting, GluMind incorporates a knowledge retention technique into the transformer-based forecasting model. The knowledge retention module not only enhances the model's ability to retain prior knowledge but also boosts its overall forecasting performance. We evaluate GluMind on the recently released AIREADI dataset, which contains behavioral and physiological data collected from healthy people, individuals with prediabetes, and those with type 2 diabetes. We examine the performance stability and adaptability of GluMind in learning continuously as new patient cohorts are introduced. Experimental results show that GluMind consistently outperforms other state-of-the-art forecasting models, achieving approximately 15% and 9% improvements in root mean squared error (RMSE) and mean absolute error (MAE), respectively.

Recent advances in distributed swarm learning (DSL) offer a promising paradigm for edge Internet of Things. Such advancements enhance data privacy, communication efficiency, energy saving, and model scalability. However, the presence of non-independent and identically distributed (non-i.i.d.) data pose a significant challenge for multi-access edge computing, degrading learning performance and diverging training behavior of vanilla DSL. Further, there still lacks theoretical guidance on how data heterogeneity affects model training accuracy, which requires thorough investigation. To fill the gap, this paper first study the data heterogeneity by measuring the impact of non-i.i.d. datasets under the DSL framework. This then motivates a new multi-worker selection design for DSL, termed M-DSL algorithm, which works effectively with distributed heterogeneous data. A new non-i.i.d. degree metric is introduced and defined in this work to formulate the statistical difference among local datasets, which builds a connection between the measure of data heterogeneity and the evaluation of DSL performance. In this way, our M-DSL guides effective selection of multiple works who make prominent contributions for global model updates. We also provide theoretical analysis on the convergence behavior of our M-DSL, followed by extensive experiments on different heterogeneous datasets and non-i.i.d. data settings. Numerical results verify performance improvement and network intelligence enhancement provided by our M-DSL beyond the benchmarks.