We present the Manuscripts of Handwritten Arabic (Muharaf) dataset, which is a machine learning dataset consisting of more than 1,600 historic handwritten page images transcribed by experts in archival Arabic. Each document image is accompanied by spatial polygonal coordinates of its text lines as well as basic page elements. This dataset was compiled to advance the state of the art in handwritten text recognition (HTR), not only for Arabic manuscripts but also for cursive text in general. The Muharaf dataset includes diverse handwriting styles and a wide range of document types, including personal letters, diaries, notes, poems, church records, and legal correspondences. In this paper, we describe the data acquisition pipeline, notable dataset features, and statistics. We also provide a preliminary baseline result achieved by training convolutional neural networks using this data.

Deep Learning in Image Registration (DLIR) methods have been tremendously successful in image registration due to their speed and ability to incorporate weak label supervision at training time. However, DLIR methods forego many of the benefits of classical optimization-based methods. The functional nature of deep networks do not guarantee that the predicted transformation is a local minima of the registration objective, the representation of the transformation (displacement/velocity field/affine) is fixed, and the networks are not robust to domain shift. Our method aims to bridge this gap between classical and learning methods by incorporating optimization as a layer in a deep network. A deep network is trained to predict multi-scale dense feature images that are registered using a black box iterative optimization solver. This optimal warp is then used to minimize image and label alignment errors. By implicitly differentiating end-to-end through an iterative optimization solver, our learned features are registration and label-aware, and the warp functions are guaranteed to be local minima of the registration objective in the feature space. Our framework shows excellent performance on in-domain datasets, and is agnostic to domain shift such as anisotropy and varying intensity profiles. For the first time, our method allows switching between arbitrary transformation representations (free-form to diffeomorphic) at test time with zero retraining. End-to-end feature learning also facilitates interpretability of features, and out-of-the-box promptability using additional label-fidelity terms at inference.

The problem of using structured methods to represent knowledge is well-known in conceptual modeling and has been studied for many years. It has been proven that adopting modeling patterns represents an effective structural method. Patterns are, indeed, generalizable recurrent structures that can be exploited as solutions to design problems. They aid in understanding and improving the process of creating models. The undeniable value of using patterns in conceptual modeling was demonstrated in several experimental studies. However, discovering patterns in conceptual models is widely recognized as a highly complex task and a systematic solution to pattern identification is currently lacking. In this paper, we propose a general approach to the problem of discovering frequent structures, as they occur in conceptual modeling languages. As proof of concept for our scientific contribution, we provide an implementation of the approach, by focusing on UML class diagrams, in particular OntoUML models. This implementation comprises an exploratory tool, which, through the combination of a frequent subgraph mining algorithm and graph manipulation techniques, can process multiple conceptual models and discover recurrent structures according to multiple criteria. The primary objective is to offer a support facility for language engineers. This can be employed to leverage both good and bad modeling practices, to evolve and maintain the conceptual modeling language, and to promote the reuse of encoded experience in designing better models with the given language.

Pseudocode in a scholarly paper provides a concise way to express the algorithms implemented therein. Pseudocode can also be thought of as an intermediary representation that helps bridge the gap between programming languages and natural languages. Having access to a large collection of pseudocode can provide various benefits ranging from enhancing algorithmic understanding, facilitating further algorithmic design, to empowering NLP or computer vision based models for tasks such as automated code generation and optical character recognition (OCR). We have created a large pseudocode collection by extracting nearly 320,000 pseudocode examples from arXiv papers. This process involved scanning over $2.2$ million scholarly papers, with 1,000 of them being manually inspected and labeled. Our approach encompasses an extraction mechanism tailored to optimize the coverage and a validation mechanism based on random sampling to check its accuracy and reliability, given the inherent heterogeneity of the collection. In addition, we offer insights into common pseudocode structures, supported by clustering and statistical analyses. Notably, these analyses indicate an exponential-like growth in the usage of pseudocodes, highlighting their increasing significance.

We introduce "Generative Fusion Decoding" (GFD), a novel shallow fusion framework, utilized to integrate Large Language Models (LLMs) into multi-modal text recognition systems such as automatic speech recognition (ASR) and optical character recognition (OCR). We derive the formulas necessary to enable GFD to operate across mismatched token spaces of different models by mapping text token space to byte token space, enabling seamless fusion during the decoding process. The framework is plug-and-play, compatible with various auto-regressive models, and does not require re-training for feature alignment, thus overcoming limitations of previous fusion techniques. We highlight three main advantages of GFD: First, by simplifying the complexity of aligning different model sample spaces, GFD allows LLMs to correct errors in tandem with the recognition model, reducing computation latencies. Second, the in-context learning ability of LLMs is fully capitalized by GFD, increasing robustness in long-form speech recognition and instruction aware speech recognition. Third, GFD enables fusing recognition models deficient in Chinese text recognition with LLMs extensively trained on Chinese. Our evaluation demonstrates that GFD significantly improves performance in ASR and OCR tasks, with ASR reaching state-of-the-art in the NTUML2021 benchmark. GFD provides a significant step forward in model integration, offering a unified solution that could be widely applicable to leveraging existing pre-trained models through step by step fusion.

Ptychography is a powerful imaging technique that is used in a variety of fields, including materials science, biology, and nanotechnology. However, the accuracy of the reconstructed ptychography image is highly dependent on the accuracy of the recorded probe positions which often contain errors. These errors are typically corrected jointly with phase retrieval through numerical optimization approaches. When the error accumulates along the scan path or when the error magnitude is large, these approaches may not converge with satisfactory result. We propose a fundamentally new approach for ptychography probe position prediction for data with large position errors, where a neural network is used to make single-shot phase retrieval on individual diffraction patterns, yielding the object image at each scan point. The pairwise offsets among these images are then found using a robust image registration method, and the results are combined to yield the complete scan path by constructing and solving a linear equation. We show that our method can achieve good position prediction accuracy for data with large and accumulating errors on the order of $10^2$ pixels, a magnitude that often makes optimization-based algorithms fail to converge. For ptychography instruments without sophisticated position control equipment such as interferometers, our method is of significant practical potential.

The scarcity of large-scale palmprint databases poses a significant bottleneck to advancements in contactless palmprint recognition. To address this, researchers have turned to synthetic data generation. While Generative Adversarial Networks (GANs) have been widely used, they suffer from instability and mode collapse. Recently, diffusion probabilistic models have emerged as a promising alternative, offering stable training and better distribution coverage. This paper introduces a novel palmprint generation method using diffusion probabilistic models, develops an end-to-end framework for synthesizing multiple palm identities, and validates the realism and utility of the generated palmprints. Experimental results demonstrate the effectiveness of our approach in generating palmprint images which enhance contactless palmprint recognition performance across several test databases utilizing challenging cross-database and time-separated evaluation protocols.

Gender bias in vision-language models (VLMs) can reinforce harmful stereotypes and discrimination. In this paper, we focus on mitigating gender bias towards vision-language tasks. We identify object hallucination as the essence of gender bias in VLMs. Existing VLMs tend to focus on salient or familiar attributes in images but ignore contextualized nuances. Moreover, most VLMs rely on the co-occurrence between specific objects and gender attributes to infer the ignored features, ultimately resulting in gender bias. We propose GAMA, a task-agnostic generation framework to mitigate gender bias. GAMA consists of two stages: narrative generation and answer inference. During narrative generation, GAMA yields all-sided but gender-obfuscated narratives, which prevents premature concentration on localized image features, especially gender attributes. During answer inference, GAMA integrates the image, generated narrative, and a task-specific question prompt to infer answers for different vision-language tasks. This approach allows the model to rethink gender attributes and answers. We conduct extensive experiments on GAMA, demonstrating its debiasing and generalization ability.

The large volume and complexity of medical imaging datasets are bottlenecks for storage, transmission, and processing. To tackle these challenges, the application of low-rank matrix approximation (LRMA) and its derivative, local LRMA (LLRMA) has demonstrated potential. A detailed analysis of the literature identifies LRMA and LLRMA methods applied to various imaging modalities, and the challenges and limitations associated with existing LRMA and LLRMA methods are addressed. We note a significant shift towards a preference for LLRMA in the medical imaging field since 2015, demonstrating its potential and effectiveness in capturing complex structures in medical data compared to LRMA. Acknowledging the limitations of shallow similarity methods used with LLRMA, we suggest advanced semantic image segmentation for similarity measure, explaining in detail how it can be used to measure similar patches and its feasibility. We note that LRMA and LLRMA are mainly applied to unstructured medical data, and we propose extending their application to different medical data types, including structured and semi-structured. This paper also discusses how LRMA and LLRMA can be applied to regular data with missing entries and the impact of inaccuracies in predicting missing values and their effects. We discuss the impact of patch size and propose the use of random search (RS) to determine the optimal patch size. To enhance feasibility, a hybrid approach using Bayesian optimization and RS is proposed, which could improve the application of LRMA and LLRMA in medical imaging.

Background and Objective: In neurosurgery, fusing clinical images and depth images that can improve the information and details is beneficial to surgery. We found that the registration of face depth images was invalid frequently using existing methods. To abundant traditional image methods with depth information, a method in registering with depth images and traditional clinical images was investigated. Methods: We used the dlib library, a C++ library that could be used in face recognition, and recognized the key points on faces from the structure light camera and CT image. The two key point clouds were registered for coarse registration by the ICP method. Fine registration was finished after coarse registration by the ICP method. Results: RMSE after coarse and fine registration is as low as 0.995913 mm. Compared with traditional methods, it also takes less time. Conclusions: The new method successfully registered the facial depth image from structure light images and CT with a low error, and that would be promising and efficient in clinical application of neurosurgery.