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Gaussian Mean Field Variational Inference can Overestimate Predictive Variance

arXiv.org Machine Learning

Mean Field Variational Inference (MFVI) is widely understood to underestimate posterior variance. By analysing conjugate Bayesian Linear Regression (BLR), we show that this characterization is incomplete: while MFVI underestimates the variance in parameter space, it can overestimate the predictive variance compared to the exact posterior. We show that if the MFVI posterior underestimates predictive variances in some directions, it necessarily overestimates them in others. Crucially, this overestimation occurs in directions where the training data concentrates. This leads to the surprising result that, for a test point drawn from the training distribution, MFVI's expected predictive variance exceeds that of the exact posterior. We demonstrate a pathological case of this effect, where the MFVI posterior fails to reduce predictive variance compared to the prior on in distribution data. We connect these results to the Cold Posterior Effect, arguing that varying the temperature can correct this overestimation, yielding predictions closer to those of the exact posterior. We validate our theory on synthetic and real-world regression tasks.


Uncertainty Quantification with the Empirical Neural Tangent Kernel

Neural Information Processing Systems

While neural networks have demonstrated impressive performance across various tasks, accurately quantifying uncertainty in their predictions is essential to ensure their trustworthiness and enable widespread adoption in critical systems. Several Bayesian uncertainty quantification (UQ) methods exist that are either cheap or reliable, but not both. We propose a post-hoc, sampling-based UQ method for overparameterized networks at the end of training.


Conformal Prediction for Dyadic Regression Under Complex Missingness

arXiv.org Machine Learning

We develop a framework for conformal prediction in dyadic regression problems under complex missingness mechanisms. At the theoretical level, we develop general technical tools for establishing finite-sample validity of conformal prediction under distributional invariance conditions weaker than exchangeability. A key result handles the case where the sample itself is a random subset of the index set, a setting not covered by existing theory, via a novel bijection argument that constructs an explicit measure-preserving correspondence between events. In addition, we propose conformal prediction procedures for jointly exchangeable arrays, including full conformal, split conformal, a row-column approach exploiting similarities within rows and columns, and a selective conformal procedure achieving mask-conditional validity. For missing elements, we establish asymptotic validity of a weighted conformal procedure under a nonparametric graphon model for the missingness mechanism. We further establish conditional validity results for both continuous and discrete responses; to the best of our knowledge, this is the first formal proof of asymptotic conditional validity for weighted conformal prediction under a missing-not-at-random assumption. The proposed methods are illustrated on synthetic and real network data.


Localized Data Shapley: Accelerating Valuation for Nearest Neighbor Algorithms

Neural Information Processing Systems

Data Shapley values provide a principled approach for quantifying the contribution of individual training examples to machine learning models. However, computing these values often requires computational complexity that is exponential in the data size, and this has led researchers to pursue efficient algorithms tailored to specific machine learning models. Building on the prior success of the Shapley valuation for K-nearest neighbor (KNN) models, in this paper, we introduce a localized data Shapley framework that significantly accelerates the valuation of data points.


CRUMB: Efficient Prior Fitted Network Inference via Distributionally Matched Context Batching

arXiv.org Machine Learning

Prior-fitted networks (PFNs) are a promising class of tabular foundation models that perform in-context learning, whereby the entire labelled training set is supplied as context, and predictions for test queries are produced in a single forward pass. However, the quadratically scaling self-attention mechanism in many PFN architectures makes inference prohibitive for very large training datasets. We propose CRUMB (Clustered Retrieval Using Minimised-MMD Batching), a three-stage inference wrapper that (i) clusters the test queries, (ii) selects a small, distributionally matched training subset for each cluster by greedily minimising the maximum mean discrepancy (MMD), and (iii) runs exact PFN inference on each reduced-context batch. CRUMB is architecture-agnostic and requires no retraining. On the 51-dataset TabArena benchmark, evaluated across three PFN architectures (TabPFNv2, TabICLv1, TabICLv2), we show that CRUMB outperforms similar state-of-the-art context selection strategies. We also show that CRUMB is resilient to covariate drift, as the MMD-minimisation step naturally helps align the training context distribution to match the current test batch distributions.


Leave a Window Out: Modifying the Jackknife for Predictive Inference in Time Series

arXiv.org Machine Learning

Conformal prediction methods enjoy strong theoretical and empirical predictive inference performance, provided the data is exchangeable, and predictors are trained in a memoryless fashion. However, these assumptions and constraints are impractical in many real-data settings, such as time series (where temporal dependence violates exchangeability, and where memoryless predictors will inevitably have poor predictive accuracy). Recent work shows that the split conformal prediction method is robust to these issues of memory-based predictors and deviations from exchangeability that are common features of time-series data. However, since using sample splitting can lead to lower accuracy, this motivates asking whether other predictive inference methods (that do not rely on data splitting) could also be reliably used in the time series setting. In this work, we show that the vanilla leave-one-out jackknife can suffer an arbitrary loss of coverage even in canonical time series models with mild temporal dependence. As a remedy, we propose a careful modification tailored to such settings, which we term the \emph{leave-a-window-out} (LWO) method, and show that it can achieve valid coverage provided that the model-fitting procedure satisfies mild stability properties. Our proofs are based on quantifying the degree to which the data departs from \emph{cyclic exchangeability}, and we introduce new coefficients to measure the extent of this departure. Experiments on time series data demonstrate that our LWO method often enjoys valid coverage when the vanilla jackknife fails to cover, while producing much narrower intervals than split conformal prediction.



CRPS-Optimal Binning for Univariate Conformal Regression

arXiv.org Machine Learning

We propose a method for non-parametric conditional distribution estimation based on partitioning covariate-sorted observations into contiguous bins and using the within-bin empirical CDF as the predictive distribution. Bin boundaries are chosen to minimise the total leave-one-out Continuous Ranked Probability Score (LOO-CRPS), which admits a closed-form cost function with $O(n^2 \log n)$ precomputation and $O(n^2)$ storage; the globally optimal $K$-partition is recovered by a dynamic programme in $O(n^2 K)$ time. Minimisation of within-sample LOO-CRPS turns out to be inappropriate for selecting $K$ as it results in in-sample optimism. We instead select $K$ by $K$-fold cross-validation of test CRPS, which yields a U-shaped criterion with a well-defined minimum. Having selected $K^*$ and fitted the full-data partition, we form two complementary predictive objects: the Venn prediction band and a conformal prediction set based on CRPS as the nonconformity score, which carries a finite-sample marginal coverage guarantee at any prescribed level $\varepsilon$. The conformal prediction is transductive and data-efficient, as all observations are used for both partitioning and p-value calculation, with no need to reserve a hold-out set. On real benchmarks against split-conformal competitors (Gaussian split conformal, CQR, CQR-QRF, and conformalized isotonic distributional regression), the method produces substantially narrower prediction intervals while maintaining near-nominal coverage.


A Simple Cache Model for Image Recognition

Neural Information Processing Systems

Training large-scale image recognition models is computationally expensive. This raises the question of whether there might be simple ways to improve the test performance of an already trained model without having to re-train or fine-tune it with new data. Here, we show that, surprisingly, this is indeed possible. The key observation we make is that the layers of a deep network close to the output layer contain independent, easily extractable class-relevant information that is not contained in the output layer itself. We propose to extract this extra class-relevant information using a simple key-value cache memory to improve the classification performance of the model at test time.