Code for feature engineering Interpreter: Executes generated code T abular Prediction Model: Performs cross-validation.

As the field of automated machine learning (AutoML) advances, it becomes increasingly important to incorporate domain knowledge into these systems.

Mycotoxin contamination poses a significant risk to cereal crop quality, food safety, and agricultural productivity. Accurate prediction of mycotoxin levels can support early intervention strategies and reduce economic losses. This study investigates the use of neural networks and transfer learning models to predict mycotoxin contamination in Irish oat crops as a multi-response prediction task. Our dataset comprises oat samples collected in Ireland, containing a mix of environmental, agronomic, and geographical predictors. Five modelling approaches were evaluated: a baseline multilayer perceptron (MLP), an MLP with pre-training, and three transfer learning models; TabPFN, TabNet, and FT-Transformer. Model performance was evaluated using regression (RMSE, $R^2$) and classification (AUC, F1) metrics, with results reported per toxin and on average. Additionally, permutation-based variable importance analysis was conducted to identify the most influential predictors across both prediction tasks. The transfer learning approach TabPFN provided the overall best performance, followed by the baseline MLP. Our variable importance analysis revealed that weather history patterns in the 90-day pre-harvest period were the most important predictors, alongside seed moisture content.

In recent years, differentiable penalized likelihood methods have gained popularity, optimizing the causal structure by maximizing its likelihood with respect to the data. However, recent research has shown that errors in likelihood estimation, even on relatively large sample sizes, disallow the discovery of proper structures. We propose a new approach to amortized causal discovery that addresses the limitations of likelihood estimator accuracy. Our method leverages Prior-Fitted Networks (PFNs) to amortize data-dependent likelihood estimation, yielding more reliable scores for structure learning. Experiments on synthetic, simulated, and real-world datasets show significant gains in structure recovery compared to standard baselines. Furthermore, we demonstrate directly that PFNs provide more accurate likelihood estimates than conventional neural network-based approaches.

Recent advancements in foundation models for tabular data, such as TabPFN, demonstrated that pretrained Transformer architectures can approximate Bayesian inference with high predictive performance. However, Transformers suffer from quadratic complexity with respect to sequence length, motivating the exploration of more efficient sequence models. In this work, we investigate the potential of using Hydra, a bidirectional linear-time structured state space model (SSM), as an alternative to Transformers in TabPFN. A key challenge lies in SSM's inherent sensitivity to the order of input tokens - an undesirable property for tabular datasets where the row order is semantically meaningless. We investigate to what extent a bidirectional approach can preserve efficiency and enable symmetric context aggregation. Our experiments show that this approach reduces the order-dependence, achieving predictive performance competitive to the original TabPFN model.

The development of tabular foundation models (TFMs) has accelerated in recent years, showing strong potential to outperform traditional ML methods for structured data. A key finding is that TFMs can be pretrained entirely on synthetic datasets, opening opportunities to design data generators that encourage desirable model properties. Prior work has mainly focused on crafting high-quality priors over generators to improve overall pretraining performance. Our insight is that parameterizing the generator distribution enables an adversarial robustness perspective: during training, we can adapt the generator to emphasize datasets that are particularly challenging for the model. We formalize this by introducing an optimality gap measure, given by the difference between TFM performance and the best achievable performance as estimated by strong baselines such as XGBoost, CatBoost, and Random Forests. Building on this idea, we propose Robust Tabular Foundation Models (RTFM), a model-agnostic adversarial training framework. Applied to the TabPFN V2 classifier, RTFM improves benchmark performance, with up to a 6% increase in mean normalized AUC over the original TabPFN and other baseline algorithms, while requiring less than 100k additional synthetic datasets. These results highlight a promising new direction for targeted adversarial training and fine-tuning of TFMs using synthetic data alone.

Task-agnostic tabular foundation models such as TabPFN have achieved impressive performance on tabular learning tasks, yet the origins of their inductive biases remain poorly understood. In this work, we study TabPFN through the lens of signal reconstruction and provide the first frequency-based analysis of its in-context learning behavior. We show that TabPFN possesses a broader effective frequency capacity than standard ReLU-MLPs, even without hyperparameter tuning. Moreover, unlike MLPs whose spectra evolve primarily over training epochs, we find that TabPFN's spectral capacity adapts directly to the number of samples provided in-context, a phenomenon we term Spectral Adaptivity. We further demonstrate that positional encoding modulates TabPFN's frequency response, mirroring classical results in implicit neural representations. Finally, we show that these properties enable TabPFN to perform training-free and hyperparameter-free image denoising, illustrating its potential as a task-agnostic implicit model. Our analysis provides new insight into the structure and inductive biases of tabular foundation models and highlights their promise for broader signal reconstruction tasks.

Transformer-based models have shown promising performance on tabular data compared to their classical counterparts such as neural networks and Gradient Boosted Decision Trees (GBDTs) in scenarios with limited training data. They utilize their pre-trained knowledge to adapt to new domains, achieving commendable performance with only a few training examples, also called the few-shot regime. However, the performance gain in the few-shot regime comes at the expense of significantly increased complexity and number of parameters. To circumvent this trade-off, we introduce TabDistill, a new strategy to distill the pre-trained knowledge in complex transformer-based models into simpler neural networks for effectively classifying tabular data. Our framework yields the best of both worlds: being parameter-efficient while performing well with limited training data. The distilled neural networks surpass classical baselines such as regular neural networks, XGBoost and logistic regression under equal training data, and in some cases, even the original transformer-based models that they were distilled from.

Tabular data is a pervasive modality spanning a wide range of domains, and this inherent diversity poses a considerable challenge for deep learning.

While tabular classification has traditionally relied on from-scratch training, a recent breakthrough called prior-data fitted networks (PFNs) challenges this approach. Similar to large language models, PFNs make use of pretraining and in-context learning to achieve strong performance on new tasks in a single forward pass.