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Conditional Inference Trees and Forests for Feature Selection

arXiv.org Machine Learning

Conditional inference trees (CIT) and conditional inference forests (CIF) reduce split-selection bias by testing features before choosing split thresholds, but repeated permutation tests and threshold searches can make these methods computationally expensive. We study CIT and CIF as top-$k$ feature-ranking methods for downstream prediction using real-data benchmarks, runtime ablations, and synthetic feature-recovery experiments. At a fixed node, if the features and permutation budget do not depend on the node responses, Bonferroni-corrected $+1$ Monte Carlo permutation $p$-values control nodewise rejection under the complete permutation null. CIF ranks 4th among 17 classification methods on 22 datasets and 3rd among 18 regression methods on 8 datasets. With Bonferroni correction held fixed, the CIF runtime ablations indicate that adaptive stopping and the number of thresholds searched have the largest measured effect on runtime: turning off adaptive stopping and using exact threshold search increase fitting time by 4.0--8.4$\times$ and 1.9--10.8$\times$, respectively, while downstream score changes are at most 0.011. Sparse high-$p$ simulations indicate that forest feature sampling can leave informative features out of many split decisions. Overall, the results support CIF as a top-$k$ feature-ranking method in the evaluated downstream prediction benchmarks.


Deep Multitask Learning for Mixed-Type Outcomes with Shared Sparsity

arXiv.org Machine Learning

Most existing multitask learning approaches are limited by their reliance on task-specific loss functions tailored to the scale and type of each outcome. When outcomes differ across tasks, these losses are generally not directly comparable, which makes it difficult to formulate a unified objective and may limit information sharing across tasks. We propose a multitask transformation framework in which task-specific responses may differ through unknown monotone transformations. Motivated by high-dimensional biological applications in which the predictor dimension may diverge with the sample size while only a common subset of predictors is informative, we consider shared sparsity across tasks. Under this framework, we estimate the target functions and identify important predictors by optimizing a smoothed rank-based criterion with a group-Lasso penalty, implemented through a multitask deep neural network with a shared first layer. We establish the nonasymptotic excess-risk bounds, and variable-selection consistency for the proposed estimator. Simulation studies show that the proposed method achieves competitive prediction and variable-selection performance compared with competing approaches. Analyses of gene-expression studies with continuous, binary, and mixed outcomes further illustrate that the proposed method improves prediction and identifies biologically meaningful shared predictors.


When More Sampling Hurts: The Modal Ceiling and Correlation Ceiling of Test-Time Scaling

arXiv.org Machine Learning

People overthink; language models over-sample, and the extra effort can talk both into a worse answer. Reasoning systems answer a hard question by sampling it many times (test-time scaling), and the more they draw, the more often a correct answer turns up somewhere, so coverage, the fraction of problems with at least one correct try, climbs and appears to be progress. But a deployed system must return one answer, and choosing it, not knowing which try is right, is selection; selection is capped, and past a point extra samples only make the model surer of a confident mistake, even as every draw adds cost. The gap between climbing coverage and stalled selection, the identifiability gap, is the answer a model can produce but not pick. So the real question is not whether to sample but how far, and the answer is: not far. For picking an answer, the vote has already settled within a few dozen draws, the modal ceiling; for scoring a benchmark, sooner still, the correlation ceiling. Beyond that, extra draws cost compute and add nothing, and can even make the answer worse. This paper turns the cutoff into a single number, the effective number of samples, that any sampling run already reveals. The bottleneck is recognizing a right answer, not generating one.


A Mathematical Optimization Approach for Expert-Informed Bayesian Best Subset Selection

arXiv.org Machine Learning

A central challenge in statistical modeling is identifying the subset of features that belong in the true regression model. The classical best subset selection problem, recently made tractable via mixed-integer optimization (MIO), finds the globally optimal sparse solution. It does not, however, make use of any information beyond the observed data. In many applied settings, domain experts can meaningfully rank or score the relevance of candidate predictors, yet no existing framework integrates such probabilistic expert assessments directly into the best-subsets objective. This paper presents Expert-Implied Bayesian Best Subsets (EBBS), a method that incorporates domain-expert probability estimates of feature relevance into the MIO best-subsets problem through a maximum a posteriori (MAP) framework. Expert views from multiple respondents are aggregated into a single prior probability per feature using the Poisson binomial distribution for marginal probability estimates, the pairwise win rate for pairwise comparisons, or the normalized mean rank for ordinal rankings. This probability enters the objective function as a log-odds penalty term that smoothly encourages or discourages the selection of each feature consistent with the expert consensus. This paper provides analytic derivations of the MAP formulation and characterizes its theoretical properties. The proposed model reduces to Best Subsets when experts all have no views. Empirical results on synthetic and real datasets are forthcoming.


spca: An R package to Compute Least Squares Sparse Principal Components

arXiv.org Machine Learning

This paper introduces the R package spca, which provides a computational framework for least squares sparse principal component analysis (LS-SPCA). Unlike other SPCA methods, LS-SPCA generates uncorrelated sparse principal components (sPCs) that effectively maximize the explained variance while maintaining strong correlations with standard principal components (PCs). The framework also includes more computationally efficient variants that produce mildly correlated sPCs, which often have lower cardinality while explaining equal or greater variance than the LS-SPCA optimal sPCs. The spca package is built on an efficient C++ backend for matrix computations, with distinct engines for tall and fat matrices, and a flexible R frontend. The user interface offers several options for computing sPCs, such as deciding whether sparsification should stop when a threshold for cumulative variance explained or R2 with the PCs is reached, and choosing between simple forward selection, stepwise forward selection, or backward elimination for variable selection. In addition to the print(), summary(), and plot() methods, the package includes tools for comparing different "spca" solutions, grouping sparse loadings, and representing foreign SPCA solutions as "spca" objects. This article demonstrates with real datasets the use of the package in a typical LS-SPCA workflow and briefly contrasts LS-SPCA with conventional SPCA solutions . Then it compares different LS-SPCA solutions obtained from the dataset. Finally, the performance of spca on large tall and fat matrices is discussed, showing that spca offers a computationally efficient alternative for computing interpretable sPCs.


Annealed Entropic Allocation for Ranking and Selection

arXiv.org Machine Learning

We propose annealed entropic allocation, an adaptive sampling policy based on an annealed, weighted soft-min formulation of static budget allocation. We replace the maximin large-deviation rate objective with a weighted log-sum-exp surrogate that blends challenger-specific pairwise scores through soft-min weights, avoiding hard switching when several challengers are nearly active. To capture tail behavior beyond the leading exponent, the surrogate incorporates saddlepoint prefactors from refined pairwise tail asymptotics. Because these corrections are subexponential, decreasing the annealing temperature with the budget preserves the same first-order target allocation. For the static problem, we prove uniform convergence to the hard minimum, concentration of soft-min weights on active challengers, and continuity of the induced target-allocation map under fixed weights. Experiments show that the proposed methods are consistently competitive: the no-saddlepoint ablation performs best in symmetric Gaussian and exponential slippage settings, while saddlepoint weighting can help in heterogeneous or asymmetric cases.


XMSE-Aware Adaptive Empirical Bayes Estimation

arXiv.org Machine Learning

Empirical Bayes (EB) estimators can match the first-order asymptotic risk of maximum likelihood (ML) while behaving very differently at second order: recent excess mean squared error (XMSE) analysis shows that kernel-based EB estimation may be worse than ML when the kernel is poorly aligned with the true parameter. This paper turns that diagnostic into a design principle. We propose an XMSE-aware mixed estimator that interpolates between ML and EB shrinkage. Its fixed-weight XMSE is a scalar quadratic, yielding a closed-form oracle mixing weight that is no worse than both ML and the base EB estimator at the XMSE scale. A plug-in implementation based on finite-sample XMSE approximations is proved consistent, with a second-order oracle regret rate for an interior oracle weight. We further establish a transfer of the regret bound to the fixed-weight risk curve evaluated at the selected weight, a thresholded boundary rule, and extensions to compact kernel families and to finite and growing kernel dictionaries with high-probability oracle bounds. Finite impulse response simulations with SURE-tuned, hard-selection, and trace-corrected baselines, together with the public Silverbox and Cascaded Tanks benchmarks, show that the proposed estimator retains most of the benefit of regularization when it is helpful and retreats toward ML under kernel misspecification, with an identified finite-de analyzed on the benchmarks.


Model selection with proper scoring rules on data sets of time series: prefer the mean scaled score

arXiv.org Machine Learning

We study the problem of model selection among probabilistic forecasting models evaluated on datasets of multiple time series. The performance of a model on a single time series is quantified by the average value (score) of a proper scoring rule over a test set, but extending model selection to data sets of time series requires aggregating these scores. Common approaches either rely on scaling scores and averaging them (mean scaled score) or avoid scaling by using alternative statistics such as mean ranks or win rates. However, these approaches can yield conflicting conclusions. We show that such discrepancies arise from the skewness of the distribution of the scores, which is particularly pronounced when test sets are short. The skewness can cause non-mean criteria (e.g., mean rank, median, win rate) to select misspecified models. In contrast, the mean score is immune from this problem. We further show that, as the size of the test sets increases, all aggregation criteria converge to the same model selection decision, mitigating these discrepancies. Our experiments on intermittent demand time series, including data from the M5 competition, highlight the importance of sufficiently large test sets; the mean scaled score appears to be the more reliable approach, also because empirically we found its decision to remain consistent when different scaling factors are adopted.


Tree-Based Premise Selection for Lean4

Neural Information Processing Systems

Premise selection is a critical bottleneck in interactive theorem proving, particularly with large libraries. Existing methods, primarily relying on semantic embeddings, often fail to effectively leverage the rich structural information inherent in mathematical expressions. This paper proposes a novel framework for premise selection based on the structure of expression trees. The framework enhances premise selection ability by explicitly utilizing the structural information of Lean expressions and by means of the simplified tree representation obtained via common subexpression elimination. Our method employs a multi-stage filtering pipeline, incorporating structure-aware similarity measures including the Weisfeiler-Lehman kernel, tree edit distance, $\texttt{Const}$ node Jaccard similarity, and collapse-match similarity. An adaptive fusion strategy combines these metrics for refined ranking. To handle large-scale data efficiently, we incorporate cluster-based search space optimization and structural compatibility constraints. Comprehensive evaluation on a large theorem library extracted from Mathlib4 demonstrates that our method significantly outperforms existing premise retrieval tools across various metrics. Experimental analysis, including ablation studies and parameter sensitivity analysis, validates the contribution of individual components and highlights the efficacy of our structure-aware approach and multi-metric fusion.


Recurrent Attention-based Token Selection for Efficient Streaming Video-LLMs

Neural Information Processing Systems

Video Large Language Models (Video-LLMs) excel at understanding videos incontext, provided they have full access to the video when answering queries. However, these models face challenges in streaming scenarios where hour-long videos must be processed online, and questions need timely responses. In this work, we propose a training-free approach compatible with standard Video-LLMs, leveraging three key concepts: 1) LLM-informed selection of visual tokens to identify those that the LLM has attended to and contributed to its understanding of each short clip. Our attention-based selection allows us to discard up to 95% of unimportant visual tokens with minimal performance loss; 2) Recurrent processing of past selected tokens to generate temporally coherent understanding of each processed clip; 3) Caption-based question answering for lightweight and accurate responses. Our method achieves state-of-the-art performance on streaming video benchmarks, striking a balance between efficiency and effectiveness.