The proposed MLP decoder aggregates information from different layers, andthus combining both local attention and global attention to render powerful representations.

SegFormer has two appealing features: 1) SegFormer comprises a novel hierarchically structured Transformer encoder which outputs multiscale features. It does not need positional encoding, thereby avoiding the interpolation of positional codes which leads to decreased performance when the testing resolution differs from training.

Foundation models (FMs) promise to generalize medical imaging, but their effectiveness varies. It remains unclear how pre-training domain (medical vs. general), paradigm (e.g., text-guided), and architecture influence embedding quality, hindering the selection of optimal encoders for specific radiology tasks. To address this, we evaluate vision encoders from eight medical and general-domain FMs for chest X-ray analysis. We benchmark classification (pneumothorax, cardiomegaly) and segmentation (pneumothorax, cardiac boundary) using linear probing and fine-tuning. Our results show that domain-specific pre-training provides a significant advantage; medical FMs consistently outperformed general-domain models in linear probing, establishing superior initial feature quality. However, feature utility is highly task-dependent. Pre-trained embeddings were strong for global classification and segmenting salient anatomy (e.g., heart). In contrast, for segmenting complex, subtle pathologies (e.g., pneumothorax), all FMs performed poorly without significant fine-tuning, revealing a critical gap in localizing subtle disease. Subgroup analysis showed FMs use confounding shortcuts (e.g., chest tubes for pneumothorax) for classification, a strategy that fails for precise segmentation. We also found that expensive text-image alignment is not a prerequisite; image-only (RAD-DINO) and label-supervised (Ark+) FMs were among top performers. Notably, a supervised, end-to-end baseline remained highly competitive, matching or exceeding the best FMs on segmentation tasks. These findings show that while medical pre-training is beneficial, architectural choices (e.g., multi-scale) are critical, and pre-trained features are not universally effective, especially for complex localization tasks where supervised models remain a strong alternative.

Accurate segmentation of carotid artery structures in histopathological images is vital for advancing cardiovascular disease research and diagnosis. However, deep learning model development in this domain is constrained by the scarcity of annotated cardiovascular histopathological data. This study investigates a systematic evaluation of state-of-the-art deep learning segmentation models, including convolutional neural networks (U-Net, DeepLabV3+), a Vision Transformer (SegFormer), and recent foundation models (SAM, MedSAM, MedSAM+UNet), on a limited dataset of cardiovascular histology images. Despite employing an extensive hyperparameter optimization strategy with Bayesian search, our findings reveal that model performance is highly sensitive to data splits, with minor differences driven more by statistical noise than by true algorithmic superiority. This instability exposes the limitations of standard benchmarking practices in low-data clinical settings and challenges the assumption that performance rankings reflect meaningful clinical utility.

The proposed MLP decoder aggregates information from different layers, and thus combining both local attention and global attention to render powerful representations. We show that this simple and lightweight design is the key to efficient segmentation on Transformers.

The Tibetan Plateau, known as the Asian Water Tower, faces significant water security challenges due to its high sensitivity to climate change. Advancing Earth observation for sustainable water monitoring is thus essential for building climate resilience in this region. This study proposes a two-stage transfer learning strategy using the SegFormer model to overcome domain shift and data scarcit--key barriers in developing robust AI for climate-sensitive applications. After pre-training on a diverse source domain, our model was fine-tuned for the arid Zhada Tulin area. Experimental results show a substantial performance boost: the Intersection over Union (IoU) for water body segmentation surged from 25.50% (direct transfer) to 64.84%. This AI-driven accuracy is crucial for disaster risk reduction, particularly in monitoring flash flood-prone systems. More importantly, the high-precision map reveals a highly concentrated spatial distribution of water, with over 80% of the water area confined to less than 20% of the river channel length. This quantitative finding provides crucial evidence for understanding hydrological processes and designing targeted water management and climate adaptation strategies. Our work thus demonstrates an effective technical solution for monitoring arid plateau regions and contributes to advancing AI-powered Earth observation for disaster preparedness in critical transboundary river headwaters.

Urban forests play a key role in enhancing environmental quality and supporting biodiversity in cities. Mapping and monitoring these green spaces are crucial for urban planning and conservation, yet accurately detecting trees is challenging due to complex landscapes and the variability in image resolution caused by different satellite sensors or UAV flight altitudes. While deep learning architectures have shown promise in addressing these challenges, their effectiveness remains strongly dependent on the availability of large and manually labeled datasets, which are often expensive and difficult to obtain in sufficient quantity. In this work, we propose a novel pipeline that integrates domain adaptation with GANs and Diffusion models to enhance the quality of low-resolution aerial images. Our proposed pipeline enhances low-resolution imagery while preserving semantic content, enabling effective tree segmentation without requiring large volumes of manually annotated data. Leveraging models such as pix2pix, Real-ESRGAN, Latent Diffusion, and Stable Diffusion, we generate realistic and structurally consistent synthetic samples that expand the training dataset and unify scale across domains. This approach not only improves the robustness of segmentation models across different acquisition conditions but also provides a scalable and replicable solution for remote sensing scenarios with scarce annotation resources. Experimental results demonstrated an improvement of over 50% in IoU for low-resolution images, highlighting the effectiveness of our method compared to traditional pipelines.

We introduce a generalized attention mechanism for spherical domains, enabling Transformer architectures to natively process data defined on the two-dimensional sphere - a critical need in fields such as atmospheric physics, cosmology, and robotics, where preserving spherical symmetries and topology is essential for physical accuracy. By integrating numerical quadrature weights into the attention mechanism, we obtain a geometrically faithful spherical attention that is approximately rotationally equivariant, providing strong inductive biases and leading to better performance than Cartesian approaches. To further enhance both scalability and model performance, we propose neighborhood attention on the sphere, which confines interactions to geodesic neighborhoods. This approach reduces computational complexity and introduces the additional inductive bias for locality, while retaining the symmetry properties of our method. We provide optimized CUDA kernels and memory-efficient implementations to ensure practical applicability. The method is validated on three diverse tasks: simulating shallow water equations on the rotating sphere, spherical image segmentation, and spherical depth estimation. Across all tasks, our spherical Transformers consistently outperform their planar counterparts, highlighting the advantage of geometric priors for learning on spherical domains.

Coral reefs are declining worldwide due to climate change and local stressors. To inform effective conservation or restoration, monitoring at the highest possible spatial and temporal resolution is necessary. Conventional coral reef surveying methods are limited in scalability due to their reliance on expert labor time, motivating the use of computer vision tools to automate the identification and abundance estimation of live corals from images. However, the design and evaluation of such tools has been impeded by the lack of large high quality datasets. We release the Coralscapes dataset, the first general-purpose dense semantic segmentation dataset for coral reefs, covering 2075 images, 39 benthic classes, and 174k segmentation masks annotated by experts. Coralscapes has a similar scope and the same structure as the widely used Cityscapes dataset for urban scene segmentation, allowing benchmarking of semantic segmentation models in a new challenging domain which requires expert knowledge to annotate. We benchmark a wide range of semantic segmentation models, and find that transfer learning from Coralscapes to existing smaller datasets consistently leads to state-of-the-art performance. Coralscapes will catalyze research on efficient, scalable, and standardized coral reef surveying methods based on computer vision, and holds the potential to streamline the development of underwater ecological robotics.