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Inference with correlated priors using sisters cells

Tootoonian, Sina, Schaefer, Andreas T.

arXiv.org Machine Learning

A common view of sensory processing is as probabilistic inference of latent causes from receptor activations. Standard approaches often assume these causes are a priori independent, yet real-world generative factors are typically correlated. Representing such structured priors in neural systems poses architectural challenges, particularly when direct interactions between units representing latent causes are biologically implausible or computationally expensive. Inspired by the architecture of the olfactory bulb, we propose a novel circuit motif that enables inference with correlated priors without requiring direct interactions among latent cause units. The key insight lies in using sister cells: neurons receiving shared receptor input but connected differently to local interneurons. The required interactions among latent units are implemented indirectly through their connections to the sister cells, such that correlated connectivity implies anti-correlation in the prior and vice versa. We use geometric arguments to construct connectivity that implements a given prior and to bound the number of causes for which such priors can be constructed. Using simulations, we demonstrate the efficacy of such priors for inference in noisy environments and compare the inference dynamics to those experimentally observed. Finally, we show how, under certain assumptions on latent representations, the prior used can be inferred from sister cell activations. While biologically grounded in the olfactory system, our mechanism generalises to other natural and artificial sensory systems and may inform the design of architectures for efficient inference under correlated latent structure.


Chaos may enhance expressivity in cerebellar granular layer

Tokuda, Keita, Fujiwara, Naoya, Sudo, Akihito, Katori, Yuichi

arXiv.org Machine Learning

Recent evidence suggests that Golgi cells in the cerebellar granular layer are densely connected to each other with massive gap junctions. Here, we propose that the massive gap junctions between the Golgi cells contribute to the representational complexity of the granular layer of the cerebellum by inducing chaotic dynamics. We construct a model of cerebellar granular layer with diffusion coupling through gap junctions between the Golgi cells, and evaluate the representational capability of the network with the reservoir computing framework. First, we show that the chaotic dynamics induced by diffusion coupling results in complex output patterns containing a wide range of frequency components. Second, the long non-recursive time series of the reservoir represents the passage of time from an external input. These properties of the reservoir enable mapping different spatial inputs into different temporal patterns.

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Clonal analysis of newborn hippocampal dentate granule cell proliferation and development in temporal lobe epilepsy

Singh, Shatrunjai P., LaSarge, Candi L., An, Amen, McAuliffe, John J., Danzer, Steve C.

arXiv.org Machine Learning

Hippocampal dentate granule cells are among the few neuronal cell types generated throughout adult life in mammals. In the normal brain, new granule cells are generated from progenitors in the subgranular zone and integrate in a typical fashion. During the development of epilepsy, granule cell integration is profoundly altered. The new cells migrate to ectopic locations and develop misoriented basal dendrites. Although it has been established that these abnormal cells are newly generated, it is not known whether they arise ubiquitously throughout the progenitor cell pool or are derived from a smaller number of bad actor progenitors. To explore this question, we conducted a clonal analysis study in mice expressing the Brainbow fluorescent protein reporter construct in dentate granule cell progenitors. Mice were examined 2 months after pilocarpine-induced status epilepticus, a treatment that leads to the development of epilepsy. Brain sections were rendered translucent so that entire hippocampi could be reconstructed and all fluorescently labeled cells identified. Our findings reveal that a small number of progenitors produce the majority of ectopic cells following status epilepticus, indicating that either the affected progenitors or their local microenvironments have become pathological. By contrast, granule cells with basal dendrites were equally distributed among clonal groups. This indicates that these progenitors can produce normal cells and suggests that global factors sporadically disrupt the dendritic development of some new cells. Together, these findings strongly predict that distinct mechanisms regulate different aspects


Modeling the Olfactory Bulb - Coupled Nonlinear Oscillators

Li, Zhaoping, Hopfield, John J.

Neural Information Processing Systems

A mathematical model based on the bulbar anatomy and electrophysiology is described. Simulations produce a 35-60 Hz modulated activity coherent across the bulb, mimicing the observed field potentials. The decision states (for the odor information) here can be thought of as stable cycles, rather than point stable states typical of simpler neuro-computing models. Analysis and simulations show that a group of coupled nonlinear oscillators are responsible for the oscillatory activities determined by the odor input, and that the bulb, with appropriate inputs from higher centers, can enhance or suppress the sensitivity to partiCUlar odors. The model provides a framework in which to understand the transform between odor input and the bulbar output to olfactory cortex.


Modeling the Olfactory Bulb - Coupled Nonlinear Oscillators

Li, Zhaoping, Hopfield, John J.

Neural Information Processing Systems

A mathematical model based on the bulbar anatomy and electrophysiology is described. Simulations produce a 35-60 Hz modulated activity coherent across the bulb, mimicing the observed field potentials. The decision states (for the odor information) here can be thought of as stable cycles, rather than point stable states typical of simpler neuro-computing models. Analysis and simulations show that a group of coupled nonlinear oscillators are responsible for the oscillatory activities determined by the odor input, and that the bulb, with appropriate inputs from higher centers, can enhance or suppress the sensitivity to partiCUlar odors. The model provides a framework in which to understand the transform between odor input and the bulbar output to olfactory cortex.


Modeling the Olfactory Bulb - Coupled Nonlinear Oscillators

Li, Zhaoping, Hopfield, John J.

Neural Information Processing Systems

A mathematical model based on the bulbar anatomy and electrophysiology is described. Simulations produce a 35-60 Hz modulated activity coherent across the bulb, mimicing the observed field potentials. The decision states (for the odor information) here can be thought of as stable cycles, rather than point stable states typical of simpler neuro-computing models. Analysis and simulations show that a group of coupled nonlinear oscillators are responsible for the oscillatory activities determined by the odor input, andthat the bulb, with appropriate inputs from higher centers, can enhance or suppress the sensitivity to partiCUlar odors. The model provides a framework in which to understand the transform between odor input and the bulbar output to olfactory cortex.


The Sigmoid Nonlinearity in Prepyriform Cortex

Eeckman, Frank H.

Neural Information Processing Systems

THE SIGMOID NONLINEARITY IN PREPYRIFORM CORTEX Frank H. Eeckman University of California, Berkeley, CA 94720 ABSlRACT We report a study ·on the relationship between EEG amplitude values and unit spike output in the prepyriform cortex of awake and motivated rats. This relationship takes the form of a sigmoid curve, that describes normalized pulse-output for normalized wave input. The curve is fitted using nonlinear regression and is described by its slope and maximum value. Measurements were made for both excitatory and inhibitory neurons in the cortex. These neurons are known to form a monosynaptic negative feedback loop. Both classes of cells can be described by the same parameters.


The Sigmoid Nonlinearity in Prepyriform Cortex

Eeckman, Frank H.

Neural Information Processing Systems

THE SIGMOID NONLINEARITY IN PREPYRIFORM CORTEX Frank H. Eeckman University of California, Berkeley, CA 94720 ABSlRACT We report a study ·on the relationship between EEG amplitude values and unit spike output in the prepyriform cortex of awake and motivated rats. This relationship takes the form of a sigmoid curve, that describes normalized pulse-output for normalized wave input. The curve is fitted using nonlinear regression and is described by its slope and maximum value. Measurements were made for both excitatory and inhibitory neurons in the cortex. These neurons are known to form a monosynaptic negative feedback loop. Both classes of cells can be described by the same parameters.