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Bayesian Inference of Psychometric Variables From Brain and Behavior in Implicit Association Tests

Kothe, Christian A., Mullen, Sean, Bronstein, Michael V., Hanada, Grant, Cicconet, Marcelo, McInnes, Aaron N., Mullen, Tim, Aafjes, Marc, Sponheim, Scott R., Widge, Alik S.

arXiv.org Machine Learning

Objective. We establish a principled method for inferring mental health related psychometric variables from neural and behavioral data using the Implicit Association Test (IAT) as the data generation engine, aiming to overcome the limited predictive performance (typically under 0.7 AUC) of the gold-standard D-score method, which relies solely on reaction times. Approach. We propose a sparse hierarchical Bayesian model that leverages multi-modal data to predict experiences related to mental illness symptoms in new participants. The model is a multivariate generalization of the D-score with trainable parameters, engineered for parameter efficiency in the small-cohort regime typical of IAT studies. Data from two IAT variants were analyzed: a suicidality-related E-IAT ($n=39$) and a psychosis-related PSY-IAT ($n=34$). Main Results. Our approach overcomes a high inter-individual variability and low within-session effect size in the dataset, reaching AUCs of 0.73 (E-IAT) and 0.76 (PSY-IAT) in the best modality configurations, though corrected 95% confidence intervals are wide ($\pm 0.18$) and results are marginally significant after FDR correction ($q=0.10$). Restricting the E-IAT to MDD participants improves AUC to 0.79 $[0.62, 0.97]$ (significant at $q=0.05$). Performance is on par with the best reference methods (shrinkage LDA and EEGNet) for each task, even when the latter were adapted to the task, while the proposed method was not. Accuracy was substantially above near-chance D-scores (0.50-0.53 AUC) in both tasks, with more consistent cross-task performance than any single reference method. Significance. Our framework shows promise for enhancing IAT-based assessment of experiences related to entrapment and psychosis, and potentially other mental health conditions, though further validation on larger and independent cohorts will be needed to establish clinical utility.





Visual Decoding and Reconstruction via EEG Embeddings with Guided Diffusion

Neural Information Processing Systems

How to decode human vision through neural signals has attracted a long-standing interest in neuroscience and machine learning. Modern contrastive learning and generative models improved the performance of visual decoding and reconstruction based on functional Magnetic Resonance Imaging (fMRI). However, the high cost and low temporal resolution of fMRI limit their applications in brain-computer interfaces (BCIs), prompting a high need for visual decoding based on electroencephalography (EEG). In this study, we present an end-to-end EEG-based visual reconstruction zero-shot framework, consisting of a tailored brain encoder, called the Adaptive Thinking Mapper (ATM), which projects neural signals from different sources into the shared subspace as the clip embedding, and a two-stage multi-pipe EEG-to-image generation strategy. In stage one, EEG is embedded to align the high-level clip embedding, and then the prior diffusion model refines EEG embedding into image priors.


SPD domain-specific batch normalization to crack interpretable unsupervised domain adaptation in EEG

Neural Information Processing Systems

Electroencephalography (EEG) provides access to neuronal dynamics non-invasively with millisecond resolution, rendering it a viable method in neuroscience and healthcare. However, its utility is limited as current EEG technology does not generalize well across domains (i.e., sessions and subjects) without expensive supervised re-calibration. Contemporary methods cast this transfer learning (TL) problem as a multi-source/-target unsupervised domain adaptation (UDA) problem and address it with deep learning or shallow, Riemannian geometry aware alignment methods. Both directions have, so far, failed to consistently close the performance gap to state-of-the-art domain-specific methods based on tangent space mapping (TSM) on the symmetric, positive definite (SPD) manifold.Here, we propose a machine learning framework that enables, for the first time, learning domain-invariant TSM models in an end-to-end fashion. To achieve this, we propose a new building block for geometric deep learning, which we denote SPD domain-specific momentum batch normalization (SPDDSMBN). A SPDDSMBN layer can transform domain-specific SPD inputs into domain-invariant SPD outputs, and can be readily applied to multi-source/-target and online UDA scenarios. In extensive experiments with 6 diverse EEG brain-computer interface (BCI) datasets, we obtain state-of-the-art performance in inter-session and -subject TL with a simple, intrinsically interpretable network architecture, which we denote TSMNet.


SSDLabeler: Realistic semi-synthetic data generation for multi-label artifact classification in EEG

Akama, Taketo, Connelly, Akima, Minamikawa, Shun, Polouliakh, Natalia

arXiv.org Artificial Intelligence

EEG recordings are inherently contaminated by artifacts such as ocular, muscular, and environmental noise, which obscure neural activity and complicate preprocessing. Artifact classification offers advantages in stability and transparency, providing a viable alternative to ICA-based methods that enable flexible use alongside human inspections and across various applications. However, artifact classification is limited by its training data as it requires extensive manual labeling, which cannot fully cover the diversity of real-world EEG. Semi-synthetic data (SSD) methods have been proposed to address this limitation, but prior approaches typically injected single artifact types using ICA components or required separately recorded artifact signals, reducing both the realism of the generated data and the applicability of the method. To overcome these issues, we introduce SSDLabeler, a framework that generates realistic, annotated SSDs by decomposing real EEG with ICA, epoch-level artifact verification using RMS and PSD criteria, and reinjecting multiple artifact types into clean data. When applied to train a multi-label artifact classifier, it improved accuracy on raw EEG across diverse conditions compared to prior SSD and raw EEG training, establishing a scalable foundation for artifact handling that captures the co-occurrence and complexity of real EEG.


Rethinking Generalized BCIs: Benchmarking 340,000+ Unique Algorithmic Configurations for EEG Mental Command Decoding

Barbaste, Paul, Oullier, Olivier, Vasques, Xavier

arXiv.org Artificial Intelligence

Robust decoding and classification of brain patterns measured with electroencephalography (EEG) remains a major challenge for real-world (i.e. outside scientific lab and medical facilities) brain-computer interface (BCI) applications due to well documented inter- and intra-participant variability. Here, we present a large-scale benchmark evaluating over 340,000+ unique combinations of spatial and nonlinear EEG classification. Our methodological pipeline consists in combinations of Common Spatial Patterns (CSP), Riemannian geometry, functional connectivity, and fractal- or entropy-based features across three open-access EEG datasets. Unlike prior studies, our analysis operates at the per-participant level and across multiple frequency bands (8-15 Hz and 8-30 Hz), enabling direct assessment of both group-level performance and individual variability. Covariance tangent space projection (cov-tgsp) and CSP consistently achieved the highest average classification accuracies. However, their effectiveness was strongly dataset-dependent, and marked participant-level differences persisted, particularly in the most heterogeneous of the datasets. Importantly, nonlinear methods outperformed spatial approaches for specific individuals, underscoring the need for personalized pipeline selection. Our findings highlight that no universal 'one-size-fits-all' method can optimally decode EEG motor imagery patterns across all users or datasets. Future work will require adaptive, multimodal, and possibly novel approaches to fully address neurophysiological variability in practical BCI applications where the system can automatically adapt to what makes each user unique.


Adapting Neural Audio Codecs to EEG

Kastrati, Ard, Lanzendörfer, Luca, Rigoni, Riccardo, Matilla, John Staib, Wattenhofer, Roger

arXiv.org Artificial Intelligence

EEG and audio are inherently distinct modalities, differing in sampling rate, channel structure, and scale. Yet, we show that pretrained neural audio codecs can serve as effective starting points for EEG compression, provided that the data are preprocessed to be suitable to the codec's input constraints. Using DAC, a state-of-the-art neural audio codec as our base, we demonstrate that raw EEG can be mapped into the codec's stride-based framing, enabling direct reuse of the audio-pretrained encoder-decoder. Even without modification, this setup yields stable EEG reconstructions, and fine-tuning on EEG data further improves fidelity and generalization compared to training from scratch. We systematically explore compression-quality trade-offs by varying residual codebook depth, codebook (vocabulary) size, and input sampling rate. To capture spatial dependencies across electrodes, we propose DAC-MC, a multi-channel extension with attention-based cross-channel aggregation and channel-specific decoding, while retaining the audio-pretrained initialization. Evaluations on the TUH Abnormal and Epilepsy datasets show that the adapted codecs preserve clinically relevant information, as reflected in spectrogram-based reconstruction loss and downstream classification accuracy.


Brain-MGF: Multimodal Graph Fusion Network for EEG-fMRI Brain Connectivity Analysis Under Psilocybin

Yap, Sin-Yee, Noman, Fuad, Loo, Junn Yong, Stoliker, Devon, Khajehnejad, Moein, Phan, Raphaël C. -W., Dowe, David L., Razi, Adeel, Ting, Chee-Ming

arXiv.org Artificial Intelligence

Phan 1, David L. Dowe 2, Adeel Razi 3,, and Chee-Ming Ting 1, 1 School of Information Technology, Monash University Malaysia, Malaysia 2 Department of Data Science and AI, Faculty of Information Technology, Monash University, Australia 3 Turner Institute for Brain and Mental Health, School of Psychological Sciences, Monash University, Australia ABSTRACT Psychedelics, such as psilocybin, reorganise large-scale brain connectivity, yet how these changes are reflected across electrophys-iological (electroencephalogram, EEG) and haemodynamic (functional magnetic resonance imaging, fMRI) networks remains unclear. For each modality, we construct graphs with partial-correlation edges and Pearson-profile node features, and learn subject-level embeddings via graph convolution. An adaptive softmax gate then fuses modalities with sample-specific weights to capture context-dependent contributions. Fusion improves over unimodal and nonadaptive variants, achieving 74.0% accuracy and 76.5% F1 score on meditation, and 76.0% accuracy with 85.8% ROC-AUC on rest. UMAP visualisations reveal clearer class separation for fused em-beddings.