Synthetic data generation in histopathology faces unique challenges: preserving tissue heterogeneity, capturing subtle morphological features, and scaling to unannotated datasets. We present a latent diffusion model that generates realistic heterogeneous histopathology images through a novel dual-conditioning approach combining semantic segmentation maps with tissue-specific visual crops. Unlike existing methods that rely on text prompts or abstract visual embeddings, our approach preserves critical morphological details by directly incorporating raw tissue crops from corresponding semantic regions. For annotated datasets (i.e., Camelyon16, Panda), we extract patches ensuring 20 80%tissue heterogeneity. For unannotated data (i.e., TCGA), we introduce a self-supervised extension that clusters whole-slide images into 100 tissue types using foundation model embeddings, automatically generating pseudo-semantic maps for training.

We introduce learning to condition (L2C), a scalable, data-driven framework for accelerating Most Probable Explanation (MPE) inference in Probabilistic Graphical Models (PGMs), a fundamentally intractable problem. L2C trains a neural network to score variable-value assignments based on their utility for conditioning, given observed evidence. To facilitate supervised learning, we develop a scalable data generation pipeline that extracts training signals from the search traces of existing MPE solvers. The trained network serves as a heuristic that integrates with search algorithms, acting as a conditioning strategy prior to exact inference or as a branching and node selection policy within branch-and-bound solvers.

We argue that diffusion models' success in modeling complex distributions is, for the most part, coming from their input conditioning. This paper investigates the representation used to condition diffusion models from the perspective that ideal representations should improve sample fidelity, be easy to generate, and be compositional to allow out-of-training samples generation. We introduce Discrete Latent Code (DLC), an image representation derived from Simplicial Embeddings trained with a self-supervised learning objective. DLCs are sequences of discrete tokens, as opposed to the standard continuous image embeddings. They are easy to generate and their compositionality enables sampling of novel images beyond the training distribution. Diffusion models trained with DLCs have improved generation fidelity, establishing a new state-of-the-art for unconditional image generation on ImageNet. Additionally, we show that composing DLCs allows the image generator to produce out-of-distribution samples that coherently combine the semantics of images in diverse ways. Finally, we showcase how DLCs can enable text-to-image generation by leveraging large-scale pretrained language models. We efficiently finetune a text diffusion language model to generate DLCs that produce novel samples outside of the image generator training distribution.

Algorithmic fairness has become a central topic in machine learning, and mitigating disparities across different subpopulations has emerged as a rapidly growing research area. In this paper, we systematically study the classification of functional data under fairness constraints, ensuring the disparity level of the classifier is controlled below a pre-specified threshold. We propose a unified framework for fairness-aware functional classification, tackling an infinite-dimensional functional space, addressing key challenges from the absence of density ratios and intractability of posterior probabilities, and discussing unique phenomena in functional classification. We further design a post-processing algorithm Fair Functional Linear Discriminant Analysis classifier (Fair-FLDA), which targets at homoscedastic Gaussian processes and achieves fairness via group-wise thresholding. Under weak structural assumptions on eigenspace, theoretical guarantees on fairness and excess risk controls are established. As a byproduct, our results cover the excess risk control of the standard FLDA as a special case, which, to the best of our knowledge, is first time seen. Our theoretical findings are complemented by extensive numerical experiments on synthetic and real datasets, highlighting the practicality of our designed algorithm.

Transferring appearance to 3D assets using different representations of the appearance object-such as images or text-has garnered interest due to its wide range of applications in industries like gaming, augmented reality, and digital content creation. However, state-of-the-art methods still fail when the geometry between the input and appearance objects is significantly different. A straightforward approach is to directly apply a 3D generative model, but we show that this ultimately fails to produce appealing results. Instead, we propose a principled approach inspired by universal guidance. Given a pretrained rectified flow model conditioned on image or text, our training-free method interacts with the sampling process by periodically adding guidance.

Spatial transcriptomics technologies can be used to align transcriptomes with histopathological morphology, presenting exciting new opportunities for biomolecular discovery. Using spatial transcriptomic gene expression and corresponding histology data, we construct a novel framework, GeneFlow, to map single-and multi-cell gene expression onto paired cellular images. By combining an attentionbased RNA encoder with a conditional UNet guided by rectified flow, we generate high-resolution images with different staining methods (e.g., H&E, DAPI) to highlight various cellular/ tissue structures. Rectified flow with high-order ODE solvers creates a continuous, bijective mapping between expression and image manifolds, addressing the many-to-one relationship inherent in this problem. Our method enables the generation of realistic cellular morphology features and spatially resolved intercellular interactions under genetic or chemical perturbations. This enables minimally invasive disease diagnosis by revealing dysregulated patterns in imaging phenotypes. Our rectified flow based method outperforms diffusion methods and baselines in all experiments.

Simpson's paradox poses a challenge in probabilistic inference and decision-making. Our study revisits the paradox by re-estimating its frequency with an unbiased data generation process and reaffirms that it is not an artifact of deficient data collection. Thus, it can lead to incorrect recommendations in fields as diverse as statistics, psychology, and artificial intelligence. We show that the paradox can be resolved by assuming a minimal -- though not necessarily observed -- common cause (or screening) variable for the involved random variables. In our approach, conditioning on this minimal common cause establishes the correct association between events, which coincides with the conditioning (i.e., fine-grained) option of the original Simpson paradox. This resolution applies to both discrete cases of binary variables and continuous settings modeled by Gaussian variables. For a non-minimal common cause, the resolution of the paradox is possible, but detailed knowledge of the common cause is required. Our findings extend traditional understandings of the paradox and offer practical guidance for resolving apparent contradictions in probabilistic inference, ultimately enhancing decision-making processes. This point is illustrated by several examples.

Explicit noise-level conditioning is widely regarded as essential for the effective operation of Graph Diffusion Models (GDMs). In this work, we challenge this assumption by investigating whether denoisers can implicitly infer noise levels directly from corrupted graph structures, potentially eliminating the need for explicit noise conditioning. To this end, we develop a theoretical framework centered on Bernoulli edge-flip corruptions and extend it to encompass more complex scenarios involving coupled structure-attribute noise. Extensive empirical evaluations on both synthetic and real-world graph datasets, using models such as GDSS and DiGress, provide strong support for our theoretical findings. Notably, unconditional GDMs achieve performance comparable or superior to their conditioned counterparts, while also offering reductions in parameters (4-6%) and computation time (8-10%). Our results suggest that the high-dimensional nature of graph data itself often encodes sufficient information for the denoising process, opening avenues for simpler, more efficient GDM architectures.

The rise of parallel computing hardware has made it increasingly important to understand which nonlinear state space models can be efficiently parallelized.

The global uniform aggregation of random forests leaves conditional bias along the decision boundary uncorrected. To correct this locally, we propose exploiting the structural pattern of each tree's decision path. At inference, a random forest reaches its prediction through the root-to-leaf path the sample traverses in each tree, so path-level reliability offers a finer granularity than tree-level weighting can access. We show that reliability varies meaningfully across path patterns in the boundary region identified by the forest itself, and that using this signal yields a statistically significant accuracy improvement over RF on 36 binary classification benchmarks (Wilcoxon p < 0.0001). We further devise a way to measure the sufficiency of residual information in the fitted RF's decision boundary, providing an estimate of the expected gain before the method is applied; on the qualifying group identified this way, the method delivers a mean +0.99 pp accuracy improvement with strict wins on every dataset (7/0/0). Class-recall regression -- the typical failure mode of RF correction methods -- is measured: zero minority-recall regressions and a single majority-recall regression at the 0.2 pp threshold, indicating that the correction operates in the direction of bias reduction rather than class trade-off. Our work suggests that the structural information of decision paths, previously overlooked in random forest research, can contribute to RF performance improvement.