We develop a Gaussian process framework for learning interaction kernels in multi-species interacting particle systems from trajectory data. Such systems provide a canonical setting for multiscale modeling, where simple microscopic interaction rules generate complex macroscopic behaviors. While our earlier work established a Gaussian process approach and convergence theory for single-species systems, and later extended to second-order models with alignment and energy-type interactions, the multi-species setting introduces new challenges: heterogeneous populations interact both within and across species, the number of unknown kernels grows, and asymmetric interactions such as predator-prey dynamics must be accommodated. We formulate the learning problem in a nonparametric Bayesian setting and establish rigorous statistical guarantees. Our analysis shows recoverability of the interaction kernels, provides quantitative error bounds, and proves statistical optimality of posterior estimators, thereby unifying and generalizing previous single-species theory. Numerical experiments confirm the theoretical predictions and demonstrate the effectiveness of the proposed approach, highlighting its advantages over existing kernel-based methods. This work contributes a complete statistical framework for data-driven inference of interaction laws in multi-species systems, advancing the broader multiscale modeling program of connecting microscopic particle dynamics with emergent macroscopic behavior.

A structure-preserving kernel ridge regression method is presented that allows the recovery of potentially high-dimensional and nonlinear Hamiltonian functions out of datasets made of noisy observations of Hamiltonian vector fields. The method proposes a closed-form solution that yields excellent numerical performances that surpass other techniques proposed in the literature in this setup. From the methodological point of view, the paper extends kernel regression methods to problems in which loss functions involving linear functions of gradients are required and, in particular, a differential reproducing property and a Representer Theorem are proved in this context. The relation between the structure-preserving kernel estimator and the Gaussian posterior mean estimator is analyzed. A full error analysis is conducted that provides convergence rates using fixed and adaptive regularization parameters. The good performance of the proposed estimator is illustrated with various numerical experiments.

We introduce a novel approach for learning memory kernels in Generalized Langevin Equations. This approach initially utilizes a regularized Prony method to estimate correlation functions from trajectory data, followed by regression over a Sobolev norm-based loss function with RKHS regularization. Our approach guarantees improved performance within an exponentially weighted $L^2$ space, with the kernel estimation error controlled by the error in estimated correlation functions. We demonstrate the superiority of our estimator compared to other regression estimators that rely on $L^2$ loss functions and also an estimator derived from the inverse Laplace transform, using numerical examples that highlight its consistent advantage across various weight parameter selections. Additionally, we provide examples that include the application of force and drift terms in the equation.

Modeling multi-agent systems on networks is a fundamental challenge in a wide variety of disciplines. We jointly infer the weight matrix of the network and the interaction kernel, which determine respectively which agents interact with which others and the rules of such interactions from data consisting of multiple trajectories. The estimator we propose leads naturally to a non-convex optimization problem, and we investigate two approaches for its solution: one is based on the alternating least squares (ALS) algorithm; another is based on a new algorithm named operator regression with alternating least squares (ORALS). Both algorithms are scalable to large ensembles of data trajectories. We establish coercivity conditions guaranteeing identifiability and well-posedness. The ALS algorithm appears statistically efficient and robust even in the small data regime but lacks performance and convergence guarantees. The ORALS estimator is consistent and asymptotically normal under a coercivity condition. We conduct several numerical experiments ranging from Kuramoto particle systems on networks to opinion dynamics in leader-follower models.

Nonparametric estimation of nonlocal interaction kernels is crucial in various applications involving interacting particle systems. The inference challenge, situated at the nexus of statistical learning and inverse problems, comes from the nonlocal dependency. A central question is whether the optimal minimax rate of convergence for this problem aligns with the rate of $M^{-\frac{2\beta}{2\beta+1}}$ in classical nonparametric regression, where $M$ is the sample size and $\beta$ represents the smoothness exponent of the radial kernel. Our study confirms this alignment for systems with a finite number of particles. We introduce a tamed least squares estimator (tLSE) that attains the optimal convergence rate for a broad class of exchangeable distributions. The tLSE bridges the smallest eigenvalue of random matrices and Sobolev embedding. This estimator relies on nonasymptotic estimates for the left tail probability of the smallest eigenvalue of the normal matrix. The lower minimax rate is derived using the Fano-Tsybakov hypothesis testing method. Our findings reveal that provided the inverse problem in the large sample limit satisfies a coercivity condition, the left tail probability does not alter the bias-variance tradeoff, and the optimal minimax rate remains intact. Our tLSE method offers a straightforward approach for establishing the optimal minimax rate for models with either local or nonlocal dependency.

We consider a class of stochastic dynamical networks whose governing dynamics can be modeled using a coupling function. It is shown that the dynamics of such networks can generate geometrically ergodic trajectories under some reasonable assumptions. We show that a general class of coupling functions can be learned using only one sample trajectory from the network. This is practically plausible as in numerous applications it is desired to run an experiment only once but for a longer period of time, rather than repeating the same experiment multiple times from different initial conditions. Building upon ideas from the concentration inequalities for geometrically ergodic Markov chains, we formulate several results about the convergence of the empirical estimator to the true coupling function. Our theoretical findings are supported by extensive simulation results.

Interacting particle or agent systems that display a rich variety of collection motions are ubiquitous in science and engineering. A fundamental and challenging goal is to understand the link between individual interaction rules and collective behaviors. In this paper, we study the data-driven discovery of distance-based interaction laws in second-order interacting particle systems. We propose a learning approach that models the latent interaction kernel functions as Gaussian processes, which can simultaneously fulfill two inference goals: one is the nonparametric inference of interaction kernel function with the pointwise uncertainty quantification, and the other one is the inference of unknown parameters in the non-collective forces of the system. We formulate learning interaction kernel functions as a statistical inverse problem and provide a detailed analysis of recoverability conditions, establishing that a coercivity condition is sufficient for recoverability. We provide a finite-sample analysis, showing that our posterior mean estimator converges at an optimal rate equal to the one in the classical 1-dimensional Kernel Ridge regression. Numerical results on systems that exhibit different collective behaviors demonstrate efficient learning of our approach from scarce noisy trajectory data.

In the learning of systems of interacting particles or agents, coercivity condition ensures identifiability of the interaction functions, providing the foundation of learning by nonparametric regression. The coercivity condition is equivalent to the strictly positive definiteness of an integral kernel arising in the learning. We show that for a class of interaction functions such that the system is ergodic, the integral kernel is strictly positive definite, and hence the coercivity condition holds true.

Modeling the complex interactions of systems of particles or agents is a fundamental scientific and mathematical problem that is studied in diverse fields, ranging from physics and biology, to economics and machine learning. In this work, we describe a very general second-order, heterogeneous, multivariable, interacting agent model, with an environment, that encompasses a wide variety of known systems. We describe an inference framework that uses nonparametric regression and approximation theory based techniques to efficiently derive estimators of the interaction kernels which drive these dynamical systems. We develop a complete learning theory which establishes strong consistency and optimal nonparametric min-max rates of convergence for the estimators, as well as provably accurate predicted trajectories. The estimators exploit the structure of the equations in order to overcome the curse of dimensionality and we describe a fundamental coercivity condition on the inverse problem which ensures that the kernels can be learned and relates to the minimal singular value of the learning matrix. The numerical algorithm presented to build the estimators is parallelizable, performs well on high-dimensional problems, and is demonstrated on complex dynamical systems.

We consider stochastic systems of interacting particles or agents, with dynamics determined by an interaction kernel which only depends on pairwise distances. We study the problem of inferring this interaction kernel from observations of the positions of the particles, in either continuous or discrete time, along multiple independent trajectories. We introduce a nonparametric inference approach to this inverse problem, based on a regularized maximum likelihood estimator constrained to suitable hypothesis spaces adaptive to data. We show that a coercivity condition enables us to control the condition number of this problem and prove the consistency of our estimator, and that in fact it converges at a near-optimal learning rate, equal to the min-max rate of $1$-dimensional non-parametric regression. In particular, this rate is independent of the dimension of the state space, which is typically very high. We also analyze the discretization errors in the case of discrete-time observations, showing that it is of order $1/2$ in terms of the time gaps between observations. This term, when large, dominates the sampling error and the approximation error, preventing convergence of the estimator. Finally, we exhibit an efficient parallel algorithm to construct the estimator from data, and we demonstrate the effectiveness of our algorithm with numerical tests on prototype systems including stochastic opinion dynamics and a Lennard-Jones model.