NER learns to regress continuous representations of neural dynamics (i.e., embeddings) on continuous movements.

Dynamic brain data, teeming with biological and functional insights, are becoming increasingly accessible through advanced measurements, providing a gateway to understanding the inner workings of the brain in living subjects. However, the vast size and intricate complexity of the data also pose a daunting challenge in reliably extracting meaningful information across various data sources. This paper introduces a generalizable unsupervised deep manifold learning for exploration of neurocognitive and behavioral patterns. Unlike existing methods that extract patterns directly from the input data as in the existing methods, the proposed Brain-dynamic Convolutional-Network-based Embedding (BCNE) seeks to capture the brain-state trajectories by deciphering the temporospatial correlations within the data and subsequently applying manifold learning to this correlative representation. The performance of BCNE is showcased through the analysis of several important dynamic brain datasets. The results, both visual and quantitative, reveal a diverse array of intriguing and interpretable patterns. BCNE effectively delineates scene transitions, underscores the involvement of different brain regions in memory and narrative processing, distinguishes various stages of dynamic learning processes, and identifies differences between active and passive behaviors. BCNE provides an effective tool for exploring general neuroscience inquiries or individual-specific patterns.

Gradient-based attribution methods aim to explain decisions of deep learning models but so far lack identifiability guarantees. Here, we propose a method to generate attribution maps with identifiability guarantees by developing a regularized contrastive learning algorithm trained on time-series data plus a new attribution method called Inverted Neuron Gradient (collectively named xCEBRA). We show theoretically that xCEBRA has favorable properties for identifying the Jacobian matrix of the data generating process. Empirically, we demonstrate robust approximation of zero vs. non-zero entries in the ground-truth attribution map on synthetic datasets, and significant improvements across previous attribution methods based on feature ablation, Shapley values, and other gradient-based methods. Our work constitutes a first example of identifiable inference of time-series attribution maps and opens avenues to a better understanding of time-series data, such as for neural dynamics and decision-processes within neural networks.

In recent years, brain-computer interfaces have made advances in decoding various motor-related tasks, including gesture recognition and movement classification, utilizing electroencephalogram (EEG) data. These developments are fundamental in exploring how neural signals can be interpreted to recognize specific physical actions. This study centers on a written alphabet classification task, where we aim to decode EEG signals associated with handwriting. To achieve this, we incorporate hand kinematics to guide the extraction of the consistent embeddings from high-dimensional neural recordings using auxiliary variables (CEBRA). These CEBRA embeddings, along with the EEG, are processed by a parallel convolutional neural network model that extracts features from both data sources simultaneously. The model classifies nine different handwritten characters, including symbols such as exclamation marks and commas, within the alphabet. We evaluate the model using a quantitative five-fold cross-validation approach and explore the structure of the embedding space through visualizations. Our approach achieves a classification accuracy of 91 % for the nine-class task, demonstrating the feasibility of fine-grained handwriting decoding from EEG.

Have you ever struggled to describe something to your friend that you watched on TV last night? Soon, you might be able to project your mental images onto the big screen, as scientists have been doing so with mice. A team from École Polytechnique Fédérale de Lausanne (EPFL) developed an artificial intelligence (AI) tool that can interpret the rodents' brain signals. The algorithm, named CEBRA, was trained to map neural activity to specific frames in videos, so it could then predict and reconstruct what a mouse is looking at. The news comes shortly after researchers at the University of Texas at Austin used AI to turn people's thoughts into text in real-time.

Mapping behavioral actions to neural activity is a fundamental goal of neuroscience. As our ability to record large neural and behavioral data increases, there is growing interest in modeling neural dynamics during adaptive behaviors to probe neural representations. In particular, neural latent embeddings can reveal underlying correlates of behavior, yet, we lack non-linear techniques that can explicitly and flexibly leverage joint behavior and neural data. Here, we fill this gap with a novel method, CEBRA, that jointly uses behavioral and neural data in a hypothesis- or discovery-driven manner to produce consistent, high-performance latent spaces. We validate its accuracy and demonstrate our tool's utility for both calcium and electrophysiology datasets, across sensory and motor tasks, and in simple or complex behaviors across species. It allows for single and multi-session datasets to be leveraged for hypothesis testing or can be used label-free. Lastly, we show that CEBRA can be used for the mapping of space, uncovering complex kinematic features, and rapid, high-accuracy decoding of natural movies from visual cortex.