Conformal Prediction (CP) is a method to control prediction uncertainty by producing a small prediction set, ensuring a predetermined probability that the true class lies within this set. This is commonly done by defining a score, based on the model predictions, and setting a threshold on this score using a validation set. In this study, we address the problem of CP calibration when we only have access to a validation set with noisy labels. We show how we can estimate the noise-free conformal threshold based on the noisy labeled data. Our solution is flexible and can accommodate various modeling assumptions regarding the label contamination process, without needing any information about the underlying data distribution or the internal mechanisms of the machine learning classifier. We develop a coverage guarantee for uniform noise that is effective even in tasks with a large number of classes. We dub our approach Noise-Aware Conformal Prediction (NACP) and show on several natural and medical image classification datasets, including ImageNet, that it significantly outperforms current noisy label methods and achieves results comparable to those obtained with a clean validation set.

Multi-document summarization (MDS) is a challenging task, often decomposed to subtasks of salience and redundancy detection, followed by text generation. In this context, alignment of corresponding sentences between a reference summary and its source documents has been leveraged to generate training data for some of the component tasks. Yet, this enabling alignment step has usually been applied heuristically on the sentence level on a limited number of subtasks. In this paper, we propose extending the summary-source alignment framework by (1) applying it at the more fine-grained proposition span level, (2) annotating alignment manually in a multi-document setup, and (3) revealing the great potential of summary-source alignments to yield several datasets for at least six different tasks. Specifically, for each of the tasks, we release a manually annotated test set that was derived automatically from the alignment annotation. We also release development and train sets in the same way, but from automatically derived alignments. Using the datasets, each task is demonstrated with baseline models and corresponding evaluation metrics to spur future research on this broad challenge.

Conformal Prediction (CP) quantifies network uncertainty by building a small prediction set with a pre-defined probability that the correct class is within this set. In this study we tackle the problem of CP calibration based on a validation set with noisy labels. We introduce a conformal score that is robust to label noise. The noise-free conformal score is estimated using the noisy labeled data and the noise level. In the test phase the noise-free score is used to form the prediction set. We applied the proposed algorithm to several standard medical imaging classification datasets. We show that our method outperforms current methods by a large margin, in terms of the average size of the prediction set, while maintaining the required coverage.

The integration of multi-document pre-training objectives into language models has resulted in remarkable improvements in multi-document downstream tasks. In this work, we propose extending this idea by pre-training a generic multi-document model from a novel cross-document question answering pre-training objective. To that end, given a set (or cluster) of topically-related documents, we systematically generate semantically-oriented questions from a salient sentence in one document and challenge the model, during pre-training, to answer these questions while "peeking" into other topically-related documents. In a similar manner, the model is also challenged to recover the sentence from which the question was generated, again while leveraging cross-document information. This novel multi-document QA formulation directs the model to better recover cross-text informational relations, and introduces a natural augmentation that artificially increases the pre-training data. Further, unlike prior multi-document models that focus on either classification or summarization tasks, our pre-training objective formulation enables the model to perform tasks that involve both short text generation (e.g., QA) and long text generation (e.g., summarization). Following this scheme, we pre-train our model -- termed QAmden -- and evaluate its performance across several multi-document tasks, including multi-document QA, summarization, and query-focused summarization, yielding improvements of up to 7%, and significantly outperforms zero-shot GPT-3.5 and GPT-4.

Language models generate text based on successively sampling the next word. A decoding procedure based on nucleus (top-$p$) sampling chooses from the smallest possible set of words whose cumulative probability exceeds the probability $p$. In this work, we assess whether a top-$p$ set is indeed aligned with its probabilistic meaning in various linguistic contexts. We employ conformal prediction, a calibration procedure that focuses on the construction of minimal prediction sets according to a desired confidence level, to calibrate the parameter $p$ as a function of the entropy of the next word distribution. We find that OPT models are overconfident, and that calibration shows a moderate inverse scaling with model size.

Long-range transformer models have achieved encouraging results on long-context question answering (QA) tasks. Such tasks often require reasoning over a long document, and they benefit from identifying a set of evidence spans (e.g., sentences) that provide supporting evidence for addressing the question. In this work, we propose a novel method for equipping long-range transformers with an additional sequence-level objective for better identification of supporting evidence spans. We achieve this by proposing an additional contrastive supervision signal in finetuning, where the model is encouraged to explicitly discriminate supporting evidence sentences from negative ones by maximizing the question-evidence similarity. The proposed additional loss exhibits consistent improvements on three different strong long-context transformer models, across two challenging question answering benchmarks - HotpotQA and QAsper.

In this paper we propose a Deep Autoencoder MIxture Clustering (DAMIC) algorithm based on a mixture of deep autoencoders where each cluster is represented by an autoencoder. A clustering network transforms the data into another space and then selects one of the clusters. Next, the autoencoder associated with this cluster is used to reconstruct the data-point. The clustering algorithm jointly learns the nonlinear data representation and the set of autoencoders. The optimal clustering is found by minimizing the reconstruction loss of the mixture of autoencoder network. Unlike other deep clustering algorithms, no regularization term is needed to avoid data collapsing to a single point. Our experimental evaluations on image and text corpora show significant improvement over state-of-the-art methods.

In this paper we examine data fusion methods for multi-view data classification. We present a decision concept which explicitly takes into account the input multi-view structure, where for each case there is a different subset of relevant views. This data fusion concept, which we dub Mixture of Views, is implemented by a special purpose neural network architecture. It is demonstrated on the task of classifying breast microcalcifications as benign or malignant based on CC and MLO mammography views. The single view decisions are combined by a data-driven decision, according to the relevance of each view in a given case, into a global decision. The method is evaluated on a large multi-view dataset extracted from the standardized digital database for screening mammography (DDSM). The experimental results show that our method outperforms previously suggested fusion methods.

Deep learning methods, and in particular convolutional neural networks (CNNs), have led to an enormous breakthrough in a wide range of computer vision tasks, primarily by using large-scale annotated datasets. However, obtaining such datasets in the medical domain remains a challenge. In this paper, we present methods for generating synthetic medical images using recently presented deep learning Generative Adversarial Networks (GANs). Furthermore, we show that generated medical images can be used for synthetic data augmentation, and improve the performance of CNN for medical image classification. Our novel method is demonstrated on a limited dataset of computed tomography (CT) images of 182 liver lesions (53 cysts, 64 metastases and 65 hemangiomas). We first exploit GAN architectures for synthesizing high quality liver lesion ROIs. Then we present a novel scheme for liver lesion classification using CNN. Finally, we train the CNN using classic data augmentation and our synthetic data augmentation and compare performance. In addition, we explore the quality of our synthesized examples using visualization and expert assessment. The classification performance using only classic data augmentation yielded 78.6% sensitivity and 88.4% specificity. By adding the synthetic data augmentation the results increased to 85.7% sensitivity and 92.4% specificity. We believe that this approach to synthetic data augmentation can generalize to other medical classification applications and thus support radiologists' efforts to improve diagnosis.

In this work we propose a method for anatomical data augmentation that is based on using slices of computed tomography (CT) examinations that are adjacent to labeled slices as another resource of labeled data for training the network. The extended labeled data is used to train a U-net network for a pixel-wise classification into different hepatic lesions and normal liver tissues. Our dataset contains CT examinations from 140 patients with 333 CT images annotated by an expert radiologist. We tested our approach and compared it to the conventional training process. Results indicate superiority of our method. Using the anatomical data augmentation we achieved an improvement of 3% in the success rate, 5% in the classification accuracy, and 4% in Dice.