Existing methods for graph out-of-distribution (OOD) detection typically depend on training graph neural network (GNN) classifiers using a substantial amount of labeled in-distribution (ID) data. However, acquiring high-quality labeled nodes in text-attributed graphs (TAGs) is challenging and costly due to their complex textual and structural characteristics. Large language models (LLMs), known for their powerful zero-shot capabilities in textual tasks, show promise but struggle to naturally capture the critical structural information inherent to TAGs, limiting their direct effectiveness. To address these challenges, we propose LLM-GOOD, a general framework that effectively combines the strengths of LLMs and GNNs to enhance data efficiency in graph OOD detection. Specifically, we first leverage LLMs' strong zero-shot capabilities to filter out likely OOD nodes, significantly reducing the human annotation burden. To minimize the usage and cost of the LLM, we employ it only to annotate a small subset of unlabeled nodes. We then train a lightweight GNN filter using these noisy labels, enabling efficient predictions of ID status for all other unlabeled nodes by leveraging both textual and structural information. After obtaining node embeddings from the GNN filter, we can apply informativeness-based methods to select the most valuable nodes for precise human annotation. Finally, we train the target ID classifier using these accurately annotated ID nodes. Extensive experiments on four real-world TAG datasets demonstrate that LLM-GOOD significantly reduces human annotation costs and outperforms state-of-the-art baselines in terms of both ID classification accuracy and OOD detection performance.

Graph Neural Networks (GNNs) have gained traction in Graph-based Machine Learning as a Service (GMLaaS) platforms, yet they remain vulnerable to graph-based model extraction attacks (MEAs), where adversaries reconstruct surrogate models by querying the victim model. Existing defense mechanisms, such as watermarking and fingerprinting, suffer from poor real-time performance, susceptibility to evasion, or reliance on post-attack verification, making them inadequate for handling the dynamic characteristics of graph-based MEA variants. To address these limitations, we propose ATOM, a novel real-time MEA detection framework tailored for GNNs. ATOM integrates sequential modeling and reinforcement learning to dynamically detect evolving attack patterns, while leveraging $k$-core embedding to capture the structural properties, enhancing detection precision. Furthermore, we provide theoretical analysis to characterize query behaviors and optimize detection strategies. Extensive experiments on multiple real-world datasets demonstrate that ATOM outperforms existing approaches in detection performance, maintaining stable across different time steps, thereby offering a more effective defense mechanism for GMLaaS environments.

The integration of generative artificial intelligence (GenAI) into transportation planning has the potential to revolutionize tasks such as demand forecasting, infrastructure design, policy evaluation, and traffic simulation. However, there is a critical need for a systematic framework to guide the adoption of GenAI in this interdisciplinary domain. In this survey, we, a multidisciplinary team of researchers spanning computer science and transportation engineering, present the first comprehensive framework for leveraging GenAI in transportation planning. Specifically, we introduce a new taxonomy that categorizes existing applications and methodologies into two perspectives: transportation planning tasks and computational techniques. From the transportation planning perspective, we examine the role of GenAI in automating descriptive, predictive, generative, simulation, and explainable tasks to enhance mobility systems. From the computational perspective, we detail advancements in data preparation, domain-specific fine-tuning, and inference strategies, such as retrieval-augmented generation and zero-shot learning tailored to transportation applications. Additionally, we address critical challenges, including data scarcity, explainability, bias mitigation, and the development of domain-specific evaluation frameworks that align with transportation goals like sustainability, equity, and system efficiency. This survey aims to bridge the gap between traditional transportation planning methodologies and modern AI techniques, fostering collaboration and innovation. By addressing these challenges and opportunities, we seek to inspire future research that ensures ethical, equitable, and impactful use of generative AI in transportation planning.

Biological knowledge bases provide systemically functional pathways of cells or organisms in terms of molecular interaction. However, recognizing more targeted pathways, particularly when incorporating wet-lab experimental data, remains challenging and typically requires downstream biological analyses and expertise. In this paper, we frame this challenge as a solvable graph learning and explaining task and propose a novel pathway inference framework, ExPath, that explicitly integrates experimental data, specifically amino acid sequences (AA-seqs), to classify various graphs (bio-networks) in biological databases. The links (representing pathways) that contribute more to classification can be considered as targeted pathways. Technically, ExPath comprises three components: (1) a large protein language model (pLM) that encodes and embeds AA-seqs into graph, overcoming traditional obstacles in processing AA-seq data, such as BLAST; (2) PathMamba, a hybrid architecture combining graph neural networks (GNNs) with state-space sequence modeling (Mamba) to capture both local interactions and global pathway-level dependencies; and (3) PathExplainer, a subgraph learning module that identifies functionally critical nodes and edges through trainable pathway masks. We also propose ML-oriented biological evaluations and a new metric. The experiments involving 301 bio-networks evaluations demonstrate that pathways inferred by ExPath maintain biological meaningfulness. We will publicly release curated 301 bio-network data soon.

Model Extraction Attacks (MEAs) threaten modern machine learning systems by enabling adversaries to steal models, exposing intellectual property and training data. With the increasing deployment of machine learning models in distributed computing environments, including cloud, edge, and federated learning settings, each paradigm introduces distinct vulnerabilities and challenges. Without a unified perspective on MEAs across these distributed environments, organizations risk fragmented defenses, inadequate risk assessments, and substantial economic and privacy losses. This survey is motivated by the urgent need to understand how the unique characteristics of cloud, edge, and federated deployments shape attack vectors and defense requirements. We systematically examine the evolution of attack methodologies and defense mechanisms across these environments, demonstrating how environmental factors influence security strategies in critical sectors such as autonomous vehicles, healthcare, and financial services. By synthesizing recent advances in MEAs research and discussing the limitations of current evaluation practices, this survey provides essential insights for developing robust and adaptive defense strategies. Our comprehensive approach highlights the importance of integrating protective measures across the entire distributed computing landscape to ensure the secure deployment of machine learning models.

Large language models (LLMs) have revolutionized scientific research with their exceptional capabilities and transformed various fields. Among their practical applications, LLMs have been playing a crucial role in mitigating threats to human life, infrastructure, and the environment. Despite growing research in disaster LLMs, there remains a lack of systematic review and in-depth analysis of LLMs for natural disaster management. To address the gap, this paper presents a comprehensive survey of existing LLMs in natural disaster management, along with a taxonomy that categorizes existing works based on disaster phases and application scenarios. By collecting public datasets and identifying key challenges and opportunities, this study aims to guide the professional community in developing advanced LLMs for disaster management to enhance the resilience against natural disasters.

Large Language Models (LLMs) have shown impressive performance in various tasks, including knowledge graph completion (KGC). However, current studies mostly apply LLMs to classification tasks, like identifying missing triplets, rather than ranking-based tasks, where the model ranks candidate entities based on plausibility. This focus limits the practical use of LLMs in KGC, as real-world applications prioritize highly plausible triplets. Additionally, while graph paths can help infer the existence of missing triplets and improve completion accuracy, they often contain redundant information. To address these issues, we propose KG-CF, a framework tailored for ranking-based KGC tasks. KG-CF leverages LLMs' reasoning abilities to filter out irrelevant contexts, achieving superior results on real-world datasets. The code and datasets are available at \url{https://anonymous.4open.science/r/KG-CF}.

Functional Magnetic Resonance Image (fMRI) is commonly employed to study human brain activity, since it offers insight into the relationship between functional fluctuations and human behavior. To enhance analysis and comprehension of brain activity, Graph Neural Networks (GNNs) have been widely applied to the analysis of functional connectivities (FC) derived from fMRI data, due to their ability to capture the synergistic interactions among brain regions. However, in the human brain, performing complex tasks typically involves the activation of certain pathways, which could be represented as paths across graphs. As such, conventional GNNs struggle to learn from these pathways due to the long-range dependencies of multiple pathways. To address these challenges, we introduce a novel framework BrainMAP to learn Multiple Activation Pathways in Brain networks. BrainMAP leverages sequential models to identify long-range correlations among sequentialized brain regions and incorporates an aggregation module based on Mixture of Experts (MoE) to learn from multiple pathways. Our comprehensive experiments highlight BrainMAP's superior performance. Furthermore, our framework enables explanatory analyses of crucial brain regions involved in tasks. Our code is provided at https://github.com/LzyFischer/Graph-Mamba.

Spatial-temporal graphs are widely used in a variety of real-world applications. Spatial-Temporal Graph Neural Networks (STGNNs) have emerged as a powerful tool to extract meaningful insights from this data. However, in real-world applications, most nodes may not possess any available temporal data during training. For example, the pandemic dynamics of most cities on a geographical graph may not be available due to the asynchronous nature of outbreaks. Such a phenomenon disagrees with the training requirements of most existing spatial-temporal forecasting methods, which jeopardizes their effectiveness and thus blocks broader deployment. In this paper, we propose to formulate a novel problem of inductive forecasting with limited training data. In particular, given a spatial-temporal graph, we aim to learn a spatial-temporal forecasting model that can be easily generalized onto those nodes without any available temporal training data. To handle this problem, we propose a principled framework named ST-FiT. ST-FiT consists of two key learning components: temporal data augmentation and spatial graph topology learning. With such a design, ST-FiT can be used on top of any existing STGNNs to achieve superior performance on the nodes without training data. Extensive experiments verify the effectiveness of ST-FiT in multiple key perspectives.

Outlier detection (OD), also known as anomaly detection, is a critical machine learning (ML) task with applications in fraud detection, network intrusion detection, clickstream analysis, recommendation systems, and social network moderation. Among open-source libraries for outlier detection, the Python Outlier Detection (PyOD) library is the most widely adopted, with over 8,500 GitHub stars, 25 million downloads, and diverse industry usage. However, PyOD currently faces three limitations: (1) insufficient coverage of modern deep learning algorithms, (2) fragmented implementations across PyTorch and TensorFlow, and (3) no automated model selection, making it hard for non-experts. To address these issues, we present PyOD Version 2 (PyOD 2), which integrates 12 state-of-the-art deep learning models into a unified PyTorch framework and introduces a large language model (LLM)-based pipeline for automated OD model selection. These improvements simplify OD workflows, provide access to 45 algorithms, and deliver robust performance on various datasets. In this paper, we demonstrate how PyOD 2 streamlines the deployment and automation of OD models and sets a new standard in both research and industry. PyOD 2 is accessible at [https://github.com/yzhao062/pyod](https://github.com/yzhao062/pyod). This study aligns with the Web Mining and Content Analysis track, addressing topics such as the robustness of Web mining methods and the quality of algorithmically-generated Web data.