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Collaborating Authors

 Blake, Andrew


MAGIC: Modular Auto-encoder for Generalisable Model Inversion with Bias Corrections

arXiv.org Artificial Intelligence

Scientists often model physical processes to understand the natural world and uncover the causation behind observations. Due to unavoidable simplification, discrepancies often arise between model predictions and actual observations, in the form of systematic biases, whose impact varies with model completeness. Classical model inversion methods such as Bayesian inference or regressive neural networks tend either to overlook biases or make assumptions about their nature during data preprocessing, potentially leading to implausible results. Inspired by recent work in inverse graphics, we replace the decoder stage of a standard autoencoder with a physical model followed by a bias-correction layer. This generalisable approach simultaneously inverts the model and corrects its biases in an end-to-end manner without making strong assumptions about the nature of the biases. We demonstrate the effectiveness of our approach using two physical models from disparate domains: a complex radiative transfer model from remote sensing; and a volcanic deformation model from geodesy. Our method matches or surpasses results from classical approaches without requiring biases to be explicitly filtered out, suggesting an effective pathway for understanding the causation of various physical processes. The code is available on https://github.com/yihshe/


From Spectra to Biophysical Insights: End-to-End Learning with a Biased Radiative Transfer Model

arXiv.org Artificial Intelligence

Advances in machine learning have boosted the use of Earth observation data for climate change research. Yet, the interpretability of machine-learned representations remains a challenge, particularly in understanding forests' biophysical reactions to climate change. Traditional methods in remote sensing that invert radiative transfer models (RTMs) to retrieve biophysical variables from spectral data often fail to account for biases inherent in the RTM, especially for complex forests. We propose to integrate RTMs into an auto-encoder architecture, creating an end-to-end learning approach. Our method not only corrects biases in RTMs but also outperforms traditional techniques for variable retrieval like neural network regression. Furthermore, our framework has potential generally for inverting biased physical models. The code is available on https://github.com/yihshe/ai-refined-rtm.git.


Bayesian Inference for NMR Spectroscopy with Applications to Chemical Quantification

arXiv.org Machine Learning

Nuclear magnetic resonance (NMR) spectroscopy exploits the magnetic properties of atomic nuclei to discover the structure, reaction state and chemical environment of molecules. We propose a probabilistic generative model and inference procedures for NMR spectroscopy. Specifically, we use a weighted sum of trigonometric functions undergoing exponential decay to model free induction decay (FID) signals. We discuss the challenges in estimating the components of this general model -- amplitudes, phase shifts, frequencies, decay rates, and noise variances -- and offer practical solutions. We compare with conventional Fourier transform spectroscopy for estimating the relative concentrations of chemicals in a mixture, using synthetic and experimentally acquired FID signals. We find the proposed model is particularly robust to low signal to noise ratios (SNR), and overlapping peaks in the Fourier transform of the FID, enabling accurate predictions (e.g., 1% sensitivity at low SNR) which are not possible with conventional spectroscopy (5% sensitivity).



Generative Affine Localisation and Tracking

Neural Information Processing Systems

We present an extension to the Jojic and Frey (2001) layered sprite model which allows for layers to undergo affine transformations. This extension allows for affine object pose to be inferred whilst simultaneously learning theobject shape and appearance. Learning is carried out by applying an augmented variational inference algorithm which includes a global search over a discretised transform space followed by a local optimisation. Toaid correct convergence, we use bottom-up cues to restrict the space of possible affine transformations. We present results on a number of video sequences and show how the model can be extended to track an object whose appearance changes throughout the sequence.


Learning Multi-Class Dynamics

Neural Information Processing Systems

Yule-Walker) are available for learning Auto-Regressive process models of simple, directly observable, dynamical processes. When sensor noise means that dynamics are observed only approximately, learning can still been achieved via Expectation-Maximisation (EM) together with Kalman Filtering. However, this does not handle more complex dynamics, involving multiple classes of motion.


Learning Multi-Class Dynamics

Neural Information Processing Systems

Yule-Walker) are available for learning Auto-Regressive process models of simple, directly observable, dynamical processes.When sensor noise means that dynamics are observed only approximately, learning can still been achieved via Expectation-Maximisation (EM) together with Kalman Filtering. However, this does not handle more complex dynamics, involving multiple classes of motion.


Learning Multi-Class Dynamics

Neural Information Processing Systems

Yule-Walker) are available for learning Auto-Regressive process models of simple, directly observable, dynamical processes. When sensor noise means that dynamics are observed only approximately, learning can still been achieved via Expectation-Maximisation (EM) together with Kalman Filtering. However, this does not handle more complex dynamics, involving multiple classes of motion.


The CONDENSATION Algorithm - Conditional Density Propagation and Applications to Visual Tracking

Neural Information Processing Systems

The power of sampling methods in Bayesian reconstruction of noisy signals is well known. The extension of sampling to temporal problems is discussed. Efficacy of sampling over time is demonstrated with visual tracking.