Gaussian Process Molecule Property Prediction with FlowMO

Moss, Henry B., Griffiths, Ryan-Rhys

arXiv.org Machine Learning 

Built upon GPflow and RDKit, FlowMO enables the user to make predictions with well-calibrated uncertainty estimates, an output central to active learning and molecular design applications. Gaussian Processes are particularly attractive for modelling small molecular datasets, a characteristic of many real-world virtual screening campaigns where high-quality experimental data is scarce. Computational experiments across three small datasets demonstrate comparable predictive performance to deep learning methods but with superior uncertainty calibration.

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