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 Uncertainty


Dangers of Bayesian Model Averaging under Covariate Shift

Neural Information Processing Systems

Approximate Bayesian inference for neural networks is considered a robust alternative to standard training, often providing good performance on out-of-distribution data. However, Bayesian neural networks (BNNs) with high-fidelity approximate inference via full-batch Hamiltonian Monte Carlo achieve poor generalization under covariate shift, even underperforming classical estimation. We explain this surprising result, showing how a Bayesian model average can in fact be problematic under covariate shift, particularly in cases where linear dependencies in the input features cause a lack of posterior contraction. We additionally show why the same issue does not affect many approximate inference procedures, or classical maximum a-posteriori (MAP) training. Finally, we propose novel priors that improve the robustness of BNNs to many sources of covariate shift.


SPO: Sequential Monte Carlo Policy Optimisation

Neural Information Processing Systems

Leveraging planning during learning and decision-making is central to the long-term development of intelligent agents. Recent works have successfully combined tree-based search methods and self-play learning mechanisms to this end. However, these methods typically face scaling challenges due to the sequential nature of their search. While practical engineering solutions can partly overcome this, they often result in a negative impact on performance. In this paper, we introduce SPO: Sequential Monte Carlo Policy Optimisation, a model-based reinforcement learning algorithm grounded within the Expectation Maximisation (EM) framework.


Liouville PDE-based sliced-Wasserstein flow for fair regression

arXiv.org Machine Learning

The sliced Wasserstein flow (SWF), a nonparametric and implicit generative gradient flow, is applied to fair regression. We have improved the SWF in a few aspects. First, the stochastic diffusive term from the Fokker-Planck equation-based Monte Carlo is transformed to Liouville partial differential equation (PDE)-based transport with density estimation, however, without the diffusive term. Now, the computation of the Wasserstein barycenter is approximated by the SWF barycenter with the prescription of Kantorovich potentials for the induced gradient flow to generate its samples. These two efforts improve the convergence in training and testing SWF and SWF barycenters with reduced variance. Applying the generative SWF barycenter for fair regression demonstrates competent profiles in the accuracy-fairness Pareto curves.


Discrete Neural Flow Samplers with Locally Equivariant Transformer

arXiv.org Machine Learning

Sampling from unnormalised discrete distributions is a fundamental problem across various domains. While Markov chain Monte Carlo offers a principled approach, it often suffers from slow mixing and poor convergence. In this paper, we propose Discrete Neural Flow Samplers (DNFS), a trainable and efficient framework for discrete sampling. DNFS learns the rate matrix of a continuous-time Markov chain such that the resulting dynamics satisfy the Kolmogorov equation. As this objective involves the intractable partition function, we then employ control variates to reduce the variance of its Monte Carlo estimation, leading to a coordinate descent learning algorithm. To further facilitate computational efficiency, we propose locally equivaraint Transformer, a novel parameterisation of the rate matrix that significantly improves training efficiency while preserving powerful network expressiveness. Empirically, we demonstrate the efficacy of DNFS in a wide range of applications, including sampling from unnormalised distributions, training discrete energy-based models, and solving combinatorial optimisation problems.


Model Selection for Gaussian-gated Gaussian Mixture of Experts Using Dendrograms of Mixing Measures

arXiv.org Machine Learning

Mixture of Experts (MoE) models constitute a widely utilized class of ensemble learning approaches in statistics and machine learning, known for their flexibility and computational efficiency. They have become integral components in numerous state-of-the-art deep neural network architectures, particularly for analyzing heterogeneous data across diverse domains. Despite their practical success, the theoretical understanding of model selection, especially concerning the optimal number of mixture components or experts, remains limited and poses significant challenges. These challenges primarily stem from the inclusion of covariates in both the Gaussian gating functions and expert networks, which introduces intrinsic interactions governed by partial differential equations with respect to their parameters. In this paper, we revisit the concept of dendrograms of mixing measures and introduce a novel extension to Gaussian-gated Gaussian MoE models that enables consistent estimation of the true number of mixture components and achieves the pointwise optimal convergence rate for parameter estimation in overfitted scenarios. Notably, this approach circumvents the need to train and compare a range of models with varying numbers of components, thereby alleviating the computational burden, particularly in high-dimensional or deep neural network settings. Experimental results on synthetic data demonstrate the effectiveness of the proposed method in accurately recovering the number of experts. It outperforms common criteria such as the Akaike information criterion, the Bayesian information criterion, and the integrated completed likelihood, while achieving optimal convergence rates for parameter estimation and accurately approximating the regression function.


Repulsive Ensembles for Bayesian Inference in Physics-informed Neural Networks

arXiv.org Machine Learning

Physics-informed neural networks (PINNs) have proven an effective tool for solving differential equations, in particular when considering non-standard or ill-posed settings. When inferring solutions and parameters of the differential equation from data, uncertainty estimates are preferable to point estimates, as they give an idea about the accuracy of the solution. In this work, we consider the inverse problem and employ repulsive ensembles of PINNs (RE-PINN) for obtaining such estimates. The repulsion is implemented by adding a particular repulsive term to the loss function, which has the property that the ensemble predictions correspond to the true Bayesian posterior in the limit of infinite ensemble members. Where possible, we compare the ensemble predictions to Monte Carlo baselines. Whereas the standard ensemble tends to collapse to maximum-a-posteriori solutions, the repulsive ensemble produces significantly more accurate uncertainty estimates and exhibits higher sample diversity.


Minimum-Excess-Work Guidance

arXiv.org Machine Learning

We propose a regularization framework inspired by thermodynamic work for guiding pre-trained probability flow generative models (e.g., continuous normalizing flows or diffusion models) by minimizing excess work, a concept rooted in statistical mechanics and with strong conceptual connections to optimal transport. Our approach enables efficient guidance in sparse-data regimes common to scientific applications, where only limited target samples or partial density constraints are available. We introduce two strategies: Path Guidance for sampling rare transition states by concentrating probability mass on user-defined subsets, and Observable Guidance for aligning generated distributions with experimental observables while preserving entropy. We demonstrate the framework's versatility on a coarse-grained protein model, guiding it to sample transition configurations between folded/unfolded states and correct systematic biases using experimental data. The method bridges thermodynamic principles with modern generative architectures, offering a principled, efficient, and physics-inspired alternative to standard fine-tuning in data-scarce domains. Empirical results highlight improved sample efficiency and bias reduction, underscoring its applicability to molecular simulations and beyond.


Hyperparameter Optimization via Interacting with Probabilistic Circuits

arXiv.org Artificial Intelligence

Despite the growing interest in designing truly interactive hyperparameter optimization (HPO) methods, to date, only a few allow to include human feedback. Existing interactive Bayesian optimization (BO) methods incorporate human beliefs by weighting the acquisition function with a user-defined prior distribution. However, in light of the non-trivial inner optimization of the acquisition function prevalent in BO, such weighting schemes do not always accurately reflect given user beliefs. We introduce a novel BO approach leveraging tractable probabilistic models named probabilistic circuits (PCs) as a surrogate model. PCs encode a tractable joint distribution over the hybrid hyperparameter space and evaluation scores. They enable exact conditional inference and sampling. Based on conditional sampling, we construct a novel selection policy that enables an acquisition function-free generation of candidate points (thereby eliminating the need for an additional inner-loop optimization) and ensures that user beliefs are reflected accurately in the selection policy. We provide a theoretical analysis and an extensive empirical evaluation, demonstrating that our method achieves state-of-the-art performance in standard HPO and outperforms interactive BO baselines in interactive HPO.


Are Large Language Models Reliable AI Scientists? Assessing Reverse-Engineering of Black-Box Systems

arXiv.org Artificial Intelligence

Using AI to create autonomous researchers has the potential to accelerate scientific discovery. A prerequisite for this vision is understanding how well an AI model can identify the underlying structure of a black-box system from its behavior. In this paper, we explore how well a large language model (LLM) learns to identify a black-box function from passively observed versus actively collected data. We investigate the reverse-engineering capabilities of LLMs across three distinct types of black-box systems, each chosen to represent different problem domains where future autonomous AI researchers may have considerable impact: Program, Formal Language, and Math Equation. Through extensive experiments, we show that LLMs fail to extract information from observations, reaching a performance plateau that falls short of the ideal of Bayesian inference. However, we demonstrate that prompting LLMs to not only observe but also intervene -- actively querying the black-box with specific inputs to observe the resulting output -- improves performance by allowing LLMs to test edge cases and refine their beliefs. By providing the intervention data from one LLM to another, we show that this improvement is partly a result of engaging in the process of generating effective interventions, paralleling results in the literature on human learning. Further analysis reveals that engaging in intervention can help LLMs escape from two common failure modes: overcomplication, where the LLM falsely assumes prior knowledge about the black-box, and overlooking, where the LLM fails to incorporate observations. These insights provide practical guidance for helping LLMs more effectively reverse-engineer black-box systems, supporting their use in making new discoveries.


A Principled Bayesian Framework for Training Binary and Spiking Neural Networks

arXiv.org Artificial Intelligence

We propose a Bayesian framework for training binary and spiking neural networks that achieves state-of-the-art performance without normalisation layers. Unlike commonly used surrogate gradient methods -- often heuristic and sensitive to hyperparameter choices -- our approach is grounded in a probabilistic model of noisy binary networks, enabling fully end-to-end gradient-based optimisation. We introduce importance-weighted straight-through (IW-ST) estimators, a unified class generalising straight-through and relaxation-based estimators. We characterise the bias-variance trade-off in this family and derive a bias-minimising objective implemented via an auxiliary loss. Building on this, we introduce Spiking Bayesian Neural Networks (SBNNs), a variational inference framework that uses posterior noise to train Binary and Spiking Neural Networks with IW-ST. This Bayesian approach minimises gradient bias, regularises parameters, and introduces dropout-like noise. By linking low-bias conditions, vanishing gradients, and the KL term, we enable training of deep residual networks without normalisation. Experiments on CIFAR-10, DVS Gesture, and SHD show our method matches or exceeds existing approaches without normalisation or hand-tuned gradients.