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 Uncertainty


Multi-fidelity Bayesian Optimization in Engineering Design

arXiv.org Machine Learning

Resided at the intersection of multi-fidelity optimization (MFO) and Bayesian optimization (BO), MF BO has found a niche in solving expensive engineering design optimization problems, thanks to its advantages in incorporating physical and mathematical understandings of the problems, saving resources, addressing exploitation-exploration trade-off, considering uncertainty, and processing parallel computing. The increasing number of works dedicated to MF BO suggests the need for a comprehensive review of this advanced optimization technique. In this paper, we survey recent developments of two essential ingredients of MF BO: Gaussian process (GP) based MF surrogates and acquisition functions. We first categorize the existing MF modeling methods and MFO strategies to locate MF BO in a large family of surrogate-based optimization and MFO algorithms. We then exploit the common properties shared between the methods from each ingredient of MF BO to describe important GP-based MF surrogate models and review various acquisition functions. By doing so, we expect to provide a structured understanding of MF BO. Finally, we attempt to reveal important aspects that require further research for applications of MF BO in solving intricate yet important design optimization problems, including constrained optimization, high-dimensional optimization, optimization under uncertainty, and multi-objective optimization.


W-kernel and essential subspace for frequencist's evaluation of Bayesian estimators

arXiv.org Machine Learning

The posterior covariance matrix W defined by the log-likelihood of each observation plays important roles both in the sensitivity analysis and frequencist's evaluation of the Bayesian estimators. This study focused on the matrix W and its principal space; we term the latter as an essential subspace. First, it is shown that they appear in various statistical settings, such as the evaluation of the posterior sensitivity, assessment of the frequencist's uncertainty from posterior samples, and stochastic expansion of the loss; a key tool to treat frequencist's properties is the recently proposed Bayesian infinitesimal jackknife approximation (Giordano and Broderick (2023)). In the following part, we show that the matrix W can be interpreted as a reproducing kernel; it is named as W-kernel. Using the W-kernel, the essential subspace is expressed as a principal space given by the kernel PCA. A relation to the Fisher kernel and neural tangent kernel is established, which elucidates the connection to the classical asymptotic theory; it also leads to a sort of Bayesian-frequencist's duality. Finally, two applications, selection of a representative set of observations and dimensional reduction in the approximate bootstrap, are discussed. In the former, incomplete Cholesky decomposition is introduced as an efficient method to compute the essential subspace. In the latter, different implementations of the approximate bootstrap for posterior means are compared.


Favour: FAst Variance Operator for Uncertainty Rating

arXiv.org Machine Learning

Bayesian Neural Networks (BNN) have emerged as a crucial approach for interpreting ML predictions. By sampling from the posterior distribution, data scientists may estimate the uncertainty of an inference. Unfortunately many inference samples are often needed, the overhead of which greatly hinder BNN's wide adoption. To mitigate this, previous work proposed propagating the first and second moments of the posterior directly through the network. However, on its own this method is even slower than sampling, so the propagated variance needs to be approximated such as assuming independence between neural nodes. The resulting trade-off between quality and inference time did not match even plain Monte Carlo sampling. Our contribution is a more principled variance propagation framework based on "spiked covariance matrices", which smoothly interpolates between quality and inference time. This is made possible by a new fast algorithm for updating a diagonal-plus-low-rank matrix approximation under various operations. We tested our algorithm against sampling based MC Dropout and Variational Inference on a number of downstream uncertainty themed tasks, such as calibration and out-of-distribution testing. We find that Favour is as fast as performing 2-3 inference samples, while matching the performance of 10-100 samples. In summary, this work enables the use of BNN in the realm of performance critical tasks where they have previously been out of reach.


Predictive Density Combination Using a Tree-Based Synthesis Function

arXiv.org Machine Learning

Bayesian predictive synthesis (BPS) provides a method for combining multiple predictive distributions based on agent/expert opinion analysis theory and encompasses a range of existing density forecast pooling methods. The key ingredient in BPS is a ``synthesis'' function. This is typically specified parametrically as a dynamic linear regression. In this paper, we develop a nonparametric treatment of the synthesis function using regression trees. We show the advantages of our tree-based approach in two macroeconomic forecasting applications. The first uses density forecasts for GDP growth from the euro area's Survey of Professional Forecasters. The second combines density forecasts of US inflation produced by many regression models involving different predictors. Both applications demonstrate the benefits -- in terms of improved forecast accuracy and interpretability -- of modeling the synthesis function nonparametrically.


Differentiable Sampling of Categorical Distributions Using the CatLog-Derivative Trick

arXiv.org Machine Learning

Categorical random variables can faithfully represent the discrete and uncertain aspects of data as part of a discrete latent variable model. Learning in such models necessitates taking gradients with respect to the parameters of the categorical probability distributions, which is often intractable due to their combinatorial nature. A popular technique to estimate these otherwise intractable gradients is the Log-Derivative trick. This trick forms the basis of the well-known REINFORCE gradient estimator and its many extensions. While the Log-Derivative trick allows us to differentiate through samples drawn from categorical distributions, it does not take into account the discrete nature of the distribution itself. Our first contribution addresses this shortcoming by introducing the CatLog-Derivative trick - a variation of the Log-Derivative trick tailored towards categorical distributions. Secondly, we use the CatLog-Derivative trick to introduce IndeCateR, a novel and unbiased gradient estimator for the important case of products of independent categorical distributions with provably lower variance than REINFORCE. Thirdly, we empirically show that IndeCateR can be efficiently implemented and that its gradient estimates have significantly lower bias and variance for the same number of samples compared to the state of the art.


Variational Elliptical Processes

arXiv.org Machine Learning

We present elliptical processes--a family of non-parametric probabilistic models that subsumes Gaussian processes and Student's t processes. This generalization includes a range of new heavy-tailed behaviors while retaining computational tractability. Elliptical processes are based on a representation of elliptical distributions as a continuous mixture of Gaussian distributions. We parameterize this mixture distribution as a spline normalizing flow, which we train using variational inference. The proposed form of the variational posterior enables a sparse variational elliptical process applicable to large-scale problems. We highlight advantages compared to Gaussian processes through regression and classification experiments. Elliptical processes can supersede Gaussian processes in several settings, including cases where the likelihood is non-Gaussian or when accurate tail modeling is essential.


Diffusion models for probabilistic programming

arXiv.org Machine Learning

We propose diffusion model variational inference (DMVI), a novel method for automated approximate inference in probabilistic programming languages (PPLs). DMVI utilizes diffusion models as variational approximations to the true posterior distribution by deriving a novel bound to the marginal likelihood objective used in Bayesian modelling. DMVI is easy to implement, allows hassle-free inference in PPLs without the drawbacks of, e.g., variational inference using normalizing flows, and does not make any constraints on the underlying neural network model. We evaluate DMVI on a set of common Bayesian models and show that its posterior inferences are in general more accurate than those of contemporary methods used in PPLs while having a similar computational cost and requiring less manual tuning.


Knowledge Augmented Machine Learning with Applications in Autonomous Driving: A Survey

arXiv.org Artificial Intelligence

The availability of representative datasets is an essential prerequisite for many successful artificial intelligence and machine learning models. However, in real life applications these models often encounter scenarios that are inadequately represented in the data used for training. There are various reasons for the absence of sufficient data, ranging from time and cost constraints to ethical considerations. As a consequence, the reliable usage of these models, especially in safety-critical applications, is still a tremendous challenge. Leveraging additional, already existing sources of knowledge is key to overcome the limitations of purely data-driven approaches. Knowledge augmented machine learning approaches offer the possibility of compensating for deficiencies, errors, or ambiguities in the data, thus increasing the generalization capability of the applied models. Even more, predictions that conform with knowledge are crucial for making trustworthy and safe decisions even in underrepresented scenarios. This work provides an overview of existing techniques and methods in the literature that combine data-driven models with existing knowledge. The identified approaches are structured according to the categories knowledge integration, extraction and conformity. In particular, we address the application of the presented methods in the field of autonomous driving.


Provably Efficient CVaR RL in Low-rank MDPs

arXiv.org Machine Learning

We study risk-sensitive Reinforcement Learning (RL), where we aim to maximize the Conditional Value at Risk (CVaR) with a fixed risk tolerance $\tau$. Prior theoretical work studying risk-sensitive RL focuses on the tabular Markov Decision Processes (MDPs) setting. To extend CVaR RL to settings where state space is large, function approximation must be deployed. We study CVaR RL in low-rank MDPs with nonlinear function approximation. Low-rank MDPs assume the underlying transition kernel admits a low-rank decomposition, but unlike prior linear models, low-rank MDPs do not assume the feature or state-action representation is known. We propose a novel Upper Confidence Bound (UCB) bonus-driven algorithm to carefully balance the interplay between exploration, exploitation, and representation learning in CVaR RL. We prove that our algorithm achieves a sample complexity of $\tilde{O}\left(\frac{H^7 A^2 d^4}{\tau^2 \epsilon^2}\right)$ to yield an $\epsilon$-optimal CVaR, where $H$ is the length of each episode, $A$ is the capacity of action space, and $d$ is the dimension of representations. Computational-wise, we design a novel discretized Least-Squares Value Iteration (LSVI) algorithm for the CVaR objective as the planning oracle and show that we can find the near-optimal policy in a polynomial running time with a Maximum Likelihood Estimation oracle. To our knowledge, this is the first provably efficient CVaR RL algorithm in low-rank MDPs.


Handling Overlapping Asymmetric Datasets -- A Twice Penalized P-Spline Approach

arXiv.org Machine Learning

Overlapping asymmetric datasets are common in data science and pose questions of how they can be incorporated together into a predictive analysis. In healthcare datasets there is often a small amount of information that is available for a larger number of patients such as an electronic health record, however a small number of patients may have had extensive further testing. Common solutions such as missing data imputation can often be unwise if the smaller cohort is significantly different in scale to the larger sample, therefore the aim of this research is to develop a new method which can model the smaller cohort against a particular response, whilst considering the larger cohort also. Motivated by non-parametric models, and specifically flexible smoothing techniques via generalized additive models, we model a twice penalized P-Spline approximation method to firstly prevent over/under-fitting of the smaller cohort and secondly to consider the larger cohort. This second penalty is created through looking at discrepancies in the marginal value of covariates that exist in both the smaller and larger cohorts. Through a series of data simulations, penalty parameter tunings and model adaptations to consider both a continuous and binary response, we find that our twice penalized approach offers an enhanced model fit over a linear B-Spline model and once penalized P-Spline approximation method. Applying our twice penalized method to a real-life healthcare dataset relating to an individual's risk of developing Non-Alcoholic Steatohepatitis, we see an improved model fit performance of over 65% as opposed to linear and once penalized methods. Areas for future work within this space include adapting our method to not require dimensionality reduction and also consider parametric modelling methods. However, to our knowledge this is the first work to propose additional marginal penalties in a flexible regression of which we can report a vastly improved model fit that is able to consider asymmetric datasets, without the need for missing data imputation.