Temporal knowledge graphs (TKGs) have shown promise for reasoning tasks by incorporating a temporal dimension to represent how facts evolve over time. However, existing TKG reasoning (TKGR) models lack explainability due to their black-box nature. Recent work has attempted to address this through customized model architectures that generate reasoning paths, but these recent approaches have limited generalizability and provide sparse explanatory output. To enable interpretability for most TKGR models, we propose GradXKG, a novel two-stage gradient-based approach for explaining Relational Graph Convolution Network (RGCN)-based TKGR models. First, a Grad-CAM-inspired RGCN explainer tracks gradients to quantify each node's contribution across timesteps in an efficient "explain-per-use" fashion. Second, an integrated gradients explainer consolidates importance scores for RGCN outputs, extending compatibility across diverse TKGR architectures based on RGCN. Together, the two explainers highlight the most critical nodes at each timestep for a given prediction. Our extensive experiments demonstrated that, by leveraging gradient information, GradXKG provides insightful explanations grounded in the model's logic in a timely manner for most RGCN-based TKGR models. This helps address the lack of interpretability in existing TKGR models and provides a universal explanation approach applicable across various models.

Traditional Chinese Medicine (TCM) has a rich history of utilizing natural herbs to treat a diversity of illnesses. In practice, TCM diagnosis and treatment are highly personalized and organically holistic, requiring comprehensive consideration of patients' states and symptoms over time. However, existing TCM recommendation approaches overlook the changes in patients' states and only explore potential patterns between symptoms and prescriptions. In this paper, we propose a novel Sequential Condition Evolved Interaction Knowledge Graph (SCEIKG), a framework that treats the model as a sequential prescription-making problem by considering the dynamics of patients' conditions across multiple diagnoses. In addition, we incorporate an interaction knowledge graph to enhance the accuracy of recommendations by considering the interactions between different herbs and patients' conditions. Experimental results on the real-world dataset demonstrate that our approach outperforms existing TCM recommendation methods, achieving state-ofthe-art performance. Traditional Chinese Medicine (TCM) is an ancient and comprehensive system that has been integral to Chinese society for millennia (Cheung, 2011). TCM differs from Western medicine in light of its unique theoretical foundation, diagnosis methods, and treatment approaches, emphasizing the harmonious functioning of the body's structures (Zhang et al., 2015). Chinese Herbal Medicine, a key component of TCM, has gained global recognition for its positive impact on various illnesses. As a result, TCM recommendation systems, which assist physicians in making informed decisions about prescribing herbs, have emerged as crucial tools.

Foundation models in language and vision have the ability to run inference on any textual and visual inputs thanks to the transferable representations such as a vocabulary of tokens in language. Knowledge graphs (KGs) have different entity and relation vocabularies that generally do not overlap. The key challenge of designing foundation models on KGs is to learn such transferable representations that enable inference on any graph with arbitrary entity and relation vocabularies. In this work, we make a step towards such foundation models and present ULTRA, an approach for learning universal and transferable graph representations. ULTRA builds relational representations as a function conditioned on their interactions. Such a conditioning strategy allows a pre-trained ULTRA model to inductively generalize to any unseen KG with any relation vocabulary and to be fine-tuned on any graph. Conducting link prediction experiments on 57 different KGs, we find that the zero-shot inductive inference performance of a single pre-trained ULTRA model on unseen graphs of various sizes is often on par or better than strong baselines trained on specific graphs. Fine-tuning further boosts the performance.

In this paper, we propose a framework of building knowledgeable robot control in the scope of smart human-robot interaction, by empowering a basic uncalibrated visual servoing controller with contextual knowledge through the joint usage of event knowledge graphs (EKGs) and large-scale pretrained vision-language models (VLMs). The framework is expanded in twofold: first, we interpret low-level image geometry as high-level concepts, allowing us to prompt VLMs and to select geometric features of points and lines for motor control skills; then, we create an event knowledge graph (EKG) to conceptualize a robot manipulation task of interest, where the main body of the EKG is characterized by an executable behavior tree, and the leaves by semantic concepts relevant to the manipulation context. We demonstrate, in an uncalibrated environment with real robot trials, that our method lowers the reliance of human annotation during task interfacing, allows the robot to perform activities of daily living more easily by treating low-level geometric-based motor control skills as high-level concepts, and is beneficial in building cognitive thinking for smart robot applications.

Recent years have witnessed much interest in temporal reasoning over knowledge graphs (KG) for complex question answering (QA), but there remains a substantial gap in human capabilities. We explore how to generalize relational graph convolutional networks (RGCN) for temporal KGQA. Specifically, we propose a novel, intuitive and interpretable scheme to modulate the messages passed through a KG edge during convolution, based on the relevance of its associated time period to the question. We also introduce a gating device to predict if the answer to a complex temporal question is likely to be a KG entity or time and use this prediction to guide our scoring mechanism. We evaluate the resulting system, which we call TwiRGCN, on TimeQuestions, a recently released, challenging dataset for multi-hop complex temporal QA. We show that TwiRGCN significantly outperforms state-of-the-art systems on this dataset across diverse question types. Notably, TwiRGCN improves accuracy by 9--10 percentage points for the most difficult ordinal and implicit question types.

Knowledge graphs (KGs) have emerged as a powerful framework for representing and integrating complex biomedical information. However, assembling KGs from diverse sources remains a significant challenge in several aspects, including entity alignment, scalability, and the need for continuous updates to keep pace with scientific advancements. Moreover, the representative power of KGs is often limited by the scarcity of multi-modal data integration. To overcome these challenges, we propose Know2BIO, a general-purpose heterogeneous KG benchmark for the biomedical domain. Know2BIO integrates data from 30 diverse sources, capturing intricate relationships across 11 biomedical categories. It currently consists of ~219,000 nodes and ~6,200,000 edges. Know2BIO is capable of user-directed automated updating to reflect the latest knowledge in biomedical science. Furthermore, Know2BIO is accompanied by multi-modal data: node features including text descriptions, protein and compound sequences and structures, enabling the utilization of emerging natural language processing methods and multi-modal data integration strategies. We evaluate KG representation models on Know2BIO, demonstrating its effectiveness as a benchmark for KG representation learning in the biomedical field. Data and source code of Know2BIO are available at https://github.com/Yijia-Xiao/Know2BIO/.

Despite being the go-to choice for link prediction on knowledge graphs, research on interpretability of knowledge graph embeddings (KGE) has been relatively unexplored. We present KGEx, a novel post-hoc method that explains individual link predictions by drawing inspiration from surrogate models research. Given a target triple to predict, KGEx trains surrogate KGE models that we use to identify important training triples. To gauge the impact of a training triple, we sample random portions of the target triple neighborhood and we train multiple surrogate KGE models on each of them. To ensure faithfulness, each surrogate is trained by distilling knowledge from the original KGE model. We then assess how well surrogates predict the target triple being explained, the intuition being that those leading to faithful predictions have been trained on "impactful" neighborhood samples. Under this assumption, we then harvest triples that appear frequently across impactful neighborhoods. We conduct extensive experiments on two publicly available datasets, to demonstrate that KGEx is capable of providing explanations faithful to the black-box model.

Published biomedical information has and continues to rapidly increase. The recent advancements in Natural Language Processing (NLP), have generated considerable interest in automating the extraction, normalization, and representation of biomedical knowledge about entities such as genes and diseases. Our study analyzes germline abstracts in the construction of knowledge graphs of the of the immense work that has been done in this area for genes and diseases. This paper presents SimpleGermKG, an automatic knowledge graph construction approach that connects germline genes and diseases. For the extraction of genes and diseases, we employ BioBERT, a pre-trained BERT model on biomedical corpora. We propose an ontology-based and rule-based algorithm to standardize and disambiguate medical terms. For semantic relationships between articles, genes, and diseases, we implemented a part-whole relation approach to connect each entity with its data source and visualize them in a graph-based knowledge representation. Lastly, we discuss the knowledge graph applications, limitations, and challenges to inspire the future research of germline corpora. Our knowledge graph contains 297 genes, 130 diseases, and 46,747 triples. Graph-based visualizations are used to show the results.

Knowledge graphs (KGs) are gaining prominence in Healthcare AI, especially in drug discovery and pharmaceutical research as they provide a structured way to integrate diverse information sources, enhancing AI system interpretability. This interpretability is crucial in healthcare, where trust and transparency matter, and eXplainable AI (XAI) supports decision making for healthcare professionals. This overview summarizes recent literature on the impact of KGs in healthcare and their role in developing explainable AI models. We cover KG workflow, including construction, relationship extraction, reasoning, and their applications in areas like Drug-Drug Interactions (DDI), Drug Target Interactions (DTI), Drug Development (DD), Adverse Drug Reactions (ADR), and bioinformatics. We emphasize the importance of making KGs more interpretable through knowledge-infused learning in healthcare. Finally, we highlight research challenges and provide insights for future directions.

Most knowledge graph completion (KGC) methods learn latent representations of entities and relations of a given graph by mapping them into a vector space. Although the majority of these methods focus on static knowledge graphs, a large number of publicly available KGs contain temporal information stating the time instant/period over which a certain fact has been true. Such graphs are often known as temporal knowledge graphs. Furthermore, knowledge graphs may also contain textual descriptions of entities and relations. Both temporal information and textual descriptions are not taken into account during representation learning by static KGC methods, and only structural information of the graph is leveraged. Recently, some studies have used temporal information to improve link prediction, yet they do not exploit textual descriptions and do not support inductive inference (prediction on entities that have not been seen in training). We propose a novel framework called TEMT that exploits the power of pre-trained language models (PLMs) for text-enhanced temporal knowledge graph completion. The knowledge stored in the parameters of a PLM allows TEMT to produce rich semantic representations of facts and to generalize on previously unseen entities. TEMT leverages textual and temporal information available in a KG, treats them separately, and fuses them to get plausibility scores of facts. Unlike previous approaches, TEMT effectively captures dependencies across different time points and enables predictions on unseen entities. To assess the performance of TEMT, we carried out several experiments including time interval prediction, both in transductive and inductive settings, and triple classification. The experimental results show that TEMT is competitive with the state-of-the-art.