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 Ontologies


Tractable Diversity: Scalable Multiperspective Ontology Management via Standpoint EL

arXiv.org Artificial Intelligence

The tractability of the lightweight description logic EL has allowed for the construction of large and widely used ontologies that support semantic interoperability. However, comprehensive domains with a broad user base are often at odds with strong axiomatisations otherwise useful for inferencing, since these are usually context-dependent and subject to diverging perspectives. In this paper we introduce Standpoint EL, a multi-modal extension of EL that allows for the integrated representation of domain knowledge relative to diverse, possibly conflicting standpoints (or contexts), which can be hierarchically organised and put in relation to each other. We establish that Standpoint EL still exhibits EL's favourable PTime standard reasoning, whereas introducing additional features like empty standpoints, rigid roles, and nominals makes standard reasoning tasks intractable.


A Biomedical Knowledge Graph for Biomarker Discovery in Cancer

arXiv.org Artificial Intelligence

Structured and unstructured data and facts about drugs, genes, protein, viruses, and their mechanism are spread across a huge number of scientific articles. These articles are a large-scale knowledge source and can have a huge impact on disseminating knowledge about the mechanisms of certain biological processes. A domain-specific knowledge graph~(KG) is an explicit conceptualization of a specific subject-matter domain represented w.r.t semantically interrelated entities and relations. A KG can be constructed by integrating such facts and data and be used for data integration, exploration, and federated queries. However, exploration and querying large-scale KGs is tedious for certain groups of users due to a lack of knowledge about underlying data assets or semantic technologies. Such a KG will not only allow deducing new knowledge and question answering(QA) but also allows domain experts to explore. Since cross-disciplinary explanations are important for accurate diagnosis, it is important to query the KG to provide interactive explanations about learned biomarkers. Inspired by these, we construct a domain-specific KG, particularly for cancer-specific biomarker discovery. The KG is constructed by integrating cancer-related knowledge and facts from multiple sources. First, we construct a domain-specific ontology, which we call OncoNet Ontology (ONO). The ONO ontology is developed to enable semantic reasoning for verification of the predictions for relations between diseases and genes. The KG is then developed and enriched by harmonizing the ONO, additional metadata schemas, ontologies, controlled vocabularies, and additional concepts from external sources using a BERT-based information extraction method. BioBERT and SciBERT are finetuned with the selected articles crawled from PubMed. We listed down some queries and some examples of QA and deducing knowledge based on the KG.


UML: A Universal Monolingual Output Layer for Multilingual ASR

arXiv.org Artificial Intelligence

Word-piece models (WPMs) are commonly used subword units in state-of-the-art end-to-end automatic speech recognition (ASR) systems. For multilingual ASR, due to the differences in written scripts across languages, multilingual WPMs bring the challenges of having overly large output layers and scaling to more languages. In this work, we propose a universal monolingual output layer (UML) to address such problems. Instead of one output node for only one WPM, UML re-associates each output node with multiple WPMs, one for each language, and results in a smaller monolingual output layer shared across languages. Consequently, the UML enables to switch in the interpretation of each output node depending on the language of the input speech. Experimental results on an 11-language voice search task demonstrated the feasibility of using UML for high-quality and high-efficiency multilingual streaming ASR.


The notion of role in conceptual modelling

arXiv.org Artificial Intelligence

First of all, we present how the relationship between problem solving methods and domain models is tackled in different approaches. We concentrate on how they cope with this issue in the knowledge engineering process. Secondly, we introduce several properties which can be used to analyse, characterise and define the notion of role. We evaluate and compare the works exposed previously following these dimensions. This analysis suggests some developments to better exploit the relationship between reasoning and domain knowledge.


Cognitive Architecture for Decision-Making Based on Brain Principles Programming (in Russian)

arXiv.org Artificial Intelligence

We describe a cognitive architecture intended to solve a wide range of problems based on the five identified principles of brain activity, with their implementation in three subsystems: logical-probabilistic inference, probabilistic formal concepts, and functional systems theory. Building an architecture involves the implementation of a task-driven approach that allows defining the target functions of applied applications as tasks formulated in terms of the operating environment corresponding to the task, expressed in the applied ontology. We provide a basic ontology for a number of practical applications as well as for the subject domain ontologies based upon it, describe the proposed architecture, and give possible examples of the execution of these applications in this architecture.


Foundation Models for Natural Language Processing -- Pre-trained Language Models Integrating Media

arXiv.org Artificial Intelligence

This open access book provides a comprehensive overview of the state of the art in research and applications of Foundation Models and is intended for readers familiar with basic Natural Language Processing (NLP) concepts. Over the recent years, a revolutionary new paradigm has been developed for training models for NLP. These models are first pre-trained on large collections of text documents to acquire general syntactic knowledge and semantic information. Then, they are fine-tuned for specific tasks, which they can often solve with superhuman accuracy. When the models are large enough, they can be instructed by prompts to solve new tasks without any fine-tuning. Moreover, they can be applied to a wide range of different media and problem domains, ranging from image and video processing to robot control learning. Because they provide a blueprint for solving many tasks in artificial intelligence, they have been called Foundation Models. After a brief introduction to basic NLP models the main pre-trained language models BERT, GPT and sequence-to-sequence transformer are described, as well as the concepts of self-attention and context-sensitive embedding. Then, different approaches to improving these models are discussed, such as expanding the pre-training criteria, increasing the length of input texts, or including extra knowledge. An overview of the best-performing models for about twenty application areas is then presented, e.g., question answering, translation, story generation, dialog systems, generating images from text, etc. For each application area, the strengths and weaknesses of current models are discussed, and an outlook on further developments is given. In addition, links are provided to freely available program code. A concluding chapter summarizes the economic opportunities, mitigation of risks, and potential developments of AI.


GeoFault: A well-founded fault ontology for interoperability in geological modeling

arXiv.org Artificial Intelligence

Geological modeling currently uses various computer-based applications. Data harmonization at the semantic level by means of ontologies is essential for making these applications interoperable. Since geo-modeling is currently part of multidisciplinary projects, semantic harmonization is required to model not only geological knowledge but also to integrate other domain knowledge at a general level. For this reason, the domain ontologies used for describing geological knowledge must be based on a sound ontology background to ensure the described geological knowledge is integratable. This paper presents a domain ontology: GeoFault, resting on the Basic Formal Ontology BFO (Arp et al., 2015) and the GeoCore ontology (Garcia et al., 2020). It models the knowledge related to geological faults. Faults are essential to various industries but are complex to model. They can be described as thin deformed rock volumes or as spatial arrangements resulting from the different displacements of geological blocks. At a broader scale, faults are currently described as mere surfaces, which are the components of complex fault arrays. The reference to the BFO and GeoCore package allows assigning these various fault elements to define ontology classes and their logical linkage within a consistent ontology framework. The GeoFault ontology covers the core knowledge of faults 'strico sensu,' excluding ductile shear deformations. This considered vocabulary is essentially descriptive and related to regional to outcrop scales, excluding microscopic, orogenic, and tectonic plate structures. The ontology is molded in OWL 2, validated by competency questions with two use cases, and tested using an in-house ontology-driven data entry application. The work of GeoFault provides a solid framework for disambiguating fault knowledge and a foundation of fault data integration for the applications and the users.


Neurosymbolic AI for Reasoning on Graph Structures: A Survey

arXiv.org Artificial Intelligence

Neurosymbolic AI is an increasingly active area of research which aims to combine symbolic reasoning methods with deep learning to generate models with both high predictive performance and some degree of human-level comprehensibility. As knowledge graphs are becoming a popular way to represent heterogeneous and multi-relational data, methods for reasoning on graph structures have attempted to follow this neurosymbolic paradigm. Traditionally, such approaches have utilized either rule-based inference or generated representative numerical embeddings from which patterns could be extracted. However, several recent studies have attempted to bridge this dichotomy in ways that facilitate interpretability, maintain performance, and integrate expert knowledge. Within this article, we survey a breadth of methods that perform neurosymbolic reasoning tasks on graph structures. To better compare the various methods, we propose a novel taxonomy by which we can classify them. Specifically, we propose three major categories: (1) logically-informed embedding approaches, (2) embedding approaches with logical constraints, and (3) rule-learning approaches. Alongside the taxonomy, we provide a tabular overview of the approaches and links to their source code, if available, for more direct comparison. Finally, we discuss the applications on which these methods were primarily used and propose several prospective directions toward which this new field of research could evolve.


A Capability and Skill Model for Heterogeneous Autonomous Robots

arXiv.org Artificial Intelligence

Teams of heterogeneous autonomous robots become increasingly important due to their facilitation of various complex tasks. For such heterogeneous robots, there is currently no consistent way of describing the functions that each robot provides. In the field of manufacturing, capability modeling is considered a promising approach to semantically model functions provided by different machines. This contribution investigates how to apply and extend capability models from manufacturing to the field of autonomous robots and presents an approach for such a capability model.


A Parametric Similarity Method: Comparative Experiments based on Semantically Annotated Large Datasets

arXiv.org Artificial Intelligence

We present the parametric method SemSimp aimed at measuring semantic similarity of digital resources. SemSimp is based on the notion of information content, and it leverages a reference ontology and taxonomic reasoning, encompassing different approaches for weighting the concepts of the ontology. In particular, weights can be computed by considering either the available digital resources or the structure of the reference ontology of a given domain. SemSimp is assessed against six representative semantic similarity methods for comparing sets of concepts proposed in the literature, by carrying out an experimentation that includes both a statistical analysis and an expert judgement evaluation. To the purpose of achieving a reliable assessment, we used a real-world large dataset based on the Digital Library of the Association for Computing Machinery (ACM), and a reference ontology derived from the ACM Computing Classification System (ACM-CCS). For each method, we considered two indicators. The first concerns the degree of confidence to identify the similarity among the papers belonging to some special issues selected from the ACM Transactions on Information Systems journal, the second the Pearson correlation with human judgement. The results reveal that one of the configurations of SemSimp outperforms the other assessed methods. An additional experiment performed in the domain of physics shows that, in general, SemSimp provides better results than the other similarity methods.