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 Ontologies


Investigating disaster response through social media data and the Susceptible-Infected-Recovered (SIR) model: A case study of 2020 Western U.S. wildfire season

arXiv.org Artificial Intelligence

Effective disaster response is critical for affected communities. Responders and decision-makers would benefit from reliable, timely measures of the issues impacting their communities during a disaster, and social media offers a potentially rich data source. Social media can reflect public concerns and demands during a disaster, offering valuable insights for decision-makers to understand evolving situations and optimize resource allocation. We used Bidirectional Encoder Representations from Transformers (BERT) topic modeling to cluster topics from Twitter data. Then, we conducted a temporal-spatial analysis to examine the distribution of these topics across different regions during the 2020 western U.S. wildfire season. Our results show that Twitter users mainly focused on three topics:"health impact," "damage," and "evacuation." We used the Susceptible-Infected-Recovered (SIR) theory to explore the magnitude and velocity of topic diffusion on Twitter. The results displayed a clear relationship between topic trends and wildfire propagation patterns. The estimated parameters obtained from the SIR model in selected cities revealed that residents exhibited a high level of several concerns during the wildfire. Our study details how the SIR model and topic modeling using social media data can provide decision-makers with a quantitative approach to measure disaster response and support their decision-making processes.


Combining Embedding-Based and Semantic-Based Models for Post-hoc Explanations in Recommender Systems

arXiv.org Artificial Intelligence

In today's data-rich environment, recommender systems play a crucial role in decision support systems. They provide to users personalized recommendations and explanations about these recommendations. Embedding-based models, despite their widespread use, often suffer from a lack of interpretability, which can undermine trust and user engagement. This paper presents an approach that combines embedding-based and semantic-based models to generate post-hoc explanations in recommender systems, leveraging ontology-based knowledge graphs to improve interpretability and explainability. By organizing data within a structured framework, ontologies enable the modeling of intricate relationships between entities, which is essential for generating explanations. By combining embedding-based and semantic based models for post-hoc explanations in recommender systems, the framework we defined aims at producing meaningful and easy-to-understand explanations, enhancing user trust and satisfaction, and potentially promoting the adoption of recommender systems across the e-commerce sector.


Stepwise functional refoundation of relational concept analysis

arXiv.org Artificial Intelligence

Relational concept analysis (RCA) is an extension of formal concept analysis allowing to deal with several related contexts simultaneously. It has been designed for learning description logic theories from data and used within various applications. A puzzling observation about RCA is that it returns a single family of concept lattices although, when the data feature circular dependencies, other solutions may be considered acceptable. The semantics of RCA, provided in an operational way, does not shed light on this issue. In this report, we define these acceptable solutions as those families of concept lattices which belong to the space determined by the initial contexts (well-formed), cannot scale new attributes (saturated), and refer only to concepts of the family (self-supported). We adopt a functional view on the RCA process by defining the space of well-formed solutions and two functions on that space: one expansive and the other contractive. We show that the acceptable solutions are the common fixed points of both functions. This is achieved step-by-step by starting from a minimal version of RCA that considers only one single context defined on a space of contexts and a space of lattices. These spaces are then joined into a single space of context-lattice pairs, which is further extended to a space of indexed families of context-lattice pairs representing the objects manippulated by RCA. We show that RCA returns the least element of the set of acceptable solutions. In addition, it is possible to build dually an operation that generates its greatest element. The set of acceptable solutions is a complete sublattice of the interval between these two elements. Its structure and how the defined functions traverse it are studied in detail.


WEBDial, a Multi-domain, Multitask Statistical Dialogue Framework with RDF

arXiv.org Artificial Intelligence

Typically available dialogue frameworks have adopted a semantic representation based on dialogue-acts and slot-value pairs. Despite its simplicity, this representation has disadvantages such as the lack of expressivity, scalability and explainability. We present WEBDial: a dialogue framework that relies on a graph formalism by using RDF triples instead of slot-value pairs. We describe its overall architecture and the graph-based semantic representation. We show its applicability from simple to complex applications, by varying the complexity of domains and tasks: from single domain and tasks to multiple domains and complex tasks.


From Knowledge Representation to Knowledge Organization and Back

arXiv.org Artificial Intelligence

Knowledge Representation (KR) and facet-analytical Knowledge Organization (KO) have been the two most prominent methodologies of data and knowledge modelling in the Artificial Intelligence community and the Information Science community, respectively. KR boasts of a robust and scalable ecosystem of technologies to support knowledge modelling while, often, underemphasizing the quality of its models (and model-based data). KO, on the other hand, is less technology-driven but has developed a robust framework of guiding principles (canons) for ensuring modelling (and model-based data) quality. This paper elucidates both the KR and facet-analytical KO methodologies in detail and provides a functional mapping between them. Out of the mapping, the paper proposes an integrated KO-enriched KR methodology with all the standard components of a KR methodology plus the guiding canons of modelling quality provided by KO. The practical benefits of the methodological integration has been exemplified through a prominent case study of KR-based image annotation exercise.


DISO: A Domain Ontology for Modeling Dislocations in Crystalline Materials

arXiv.org Artificial Intelligence

Crystalline materials, such as metals and semiconductors, nearly always contain a special defect type called dislocation. This defect decisively determines many important material properties, e.g., strength, fracture toughness, or ductility. Over the past years, significant effort has been put into understanding dislocation behavior across different length scales via experimental characterization techniques and simulations. This paper introduces the dislocation ontology (DISO), which defines the concepts and relationships related to linear defects in crystalline materials. We developed DISO using a top-down approach in which we start defining the most general concepts in the dislocation domain and subsequent specialization of them. DISO is published through a persistent URL following W3C best practices for publishing Linked Data. Two potential use cases for DISO are presented to illustrate its usefulness in the dislocation dynamics domain. The evaluation of the ontology is performed in two directions, evaluating the success of the ontology in modeling a real-world domain and the richness of the ontology.


Semantic Computing for Organizational Effectiveness: From Organization Theory to Practice through Semantics-Based Modelling

arXiv.org Artificial Intelligence

A critical function of an organization is to foster the level of integration (coordination and cooperation) necessary to achieve its objectives. The need to coordinate and motivation to cooperate emerges from the myriad dependencies between an organization's members and their work. Therefore, to reason about solutions to coordination and cooperation problems requires a robust representation that includes the underlying dependencies. We find that such a representation remains missing from formal organizational models, and we leverage semantics to bridge this gap. Drawing on well-established organizational research and our extensive fieldwork with one of North America's largest municipalities, (1) we introduce an ontology, formalized in first-order logic, that operationalizes concepts like outcome, reward, and epistemic dependence, and their links to potential integration risks; and (2) present real-world applications of this ontology to analyze and support integration in complex government infrastructure projects. Our ontology is implemented and validated in both Z3 and OWL. Key features of our model include inferable dependencies, explainable coordination and cooperation risks, and actionable insights on how dependency structures within an organization can be altered to mitigate the risks. Conceptualizing real-world challenges like incentive misalignment, free-riding, and subgoal optimization in terms of dependency structures, our semantics-based approach represents a novel method for modelling and enhancing coordination and cooperation. Integrated within a decision-support system, our model may serve as an impactful aid for organizational design and effectiveness. More broadly, our approach underscores the transformative potential of semantics in deriving tangible, real-world value from existing organization theory.


Ontology Revision based on Pre-trained Language Models

arXiv.org Artificial Intelligence

Ontology revision aims to seamlessly incorporate a new ontology into an existing ontology and plays a crucial role in tasks such as ontology evolution, ontology maintenance, and ontology alignment. Similar to repair single ontologies, resolving logical incoherence in the task of ontology revision is also important and meaningful, because incoherence is a main potential factor to cause inconsistency and reasoning with an inconsistent ontology will obtain meaningless answers.To deal with this problem, various ontology revision approaches have been proposed to define revision operators and design ranking strategies for axioms in an ontology. However, they rarely consider axiom semantics which provides important information to differentiate axioms. In addition, pre-trained models can be utilized to encode axiom semantics, and have been widely applied in many natural language processing tasks and ontology-related ones in recent years.Therefore, in this paper, we study how to apply pre-trained models to revise ontologies. We first define four scoring functions to rank axioms based on a pre-trained model by considering various information from an ontology. Based on the functions, an ontology revision algorithm is then proposed to deal with unsatisfiable concepts at once. To improve efficiency, an adapted revision algorithm is designed to deal with unsatisfiable concepts group by group. We conduct experiments over 19 ontology pairs and compare our algorithms and scoring functions with existing ones. According to the experiments, our algorithms could achieve promising performance.


RDF-star2Vec: RDF-star Graph Embeddings for Data Mining

arXiv.org Artificial Intelligence

Knowledge Graphs (KGs) such as Resource Description Framework (RDF) data represent relationships between various entities through the structure of triples (). Knowledge graph embedding (KGE) is crucial in machine learning applications, specifically in node classification and link prediction tasks. KGE remains a vital research topic within the semantic web community. RDF-star introduces the concept of a quoted triple (QT), a specific form of triple employed either as the subject or object within another triple. Moreover, RDF-star permits a QT to act as compositional entities within another QT, thereby enabling the representation of recursive, hyper-relational KGs with nested structures. However, existing KGE models fail to adequately learn the semantics of QTs and entities, primarily because they do not account for RDF-star graphs containing multi-leveled nested QTs and QT-QT relationships. This study introduces RDF-star2Vec, a novel KGE model specifically designed for RDF-star graphs. RDF-star2Vec introduces graph walk techniques that enable probabilistic transitions between a QT and its compositional entities. Feature vectors for QTs, entities, and relations are derived from generated sequences through the structured skip-gram model. Additionally, we provide a dataset and a benchmarking framework for data mining tasks focused on complex RDF-star graphs. Evaluative experiments demonstrated that RDF-star2Vec yielded superior performance compared to recent extensions of RDF2Vec in various tasks including classification, clustering, entity relatedness, and QT similarity.


Structured prompt interrogation and recursive extraction of semantics (SPIRES): A method for populating knowledge bases using zero-shot learning

arXiv.org Artificial Intelligence

Creating knowledge bases and ontologies is a time consuming task that relies on a manual curation. AI/NLP approaches can assist expert curators in populating these knowledge bases, but current approaches rely on extensive training data, and are not able to populate arbitrary complex nested knowledge schemas. Here we present Structured Prompt Interrogation and Recursive Extraction of Semantics (SPIRES), a Knowledge Extraction approach that relies on the ability of Large Language Models (LLMs) to perform zero-shot learning (ZSL) and general-purpose query answering from flexible prompts and return information conforming to a specified schema. Given a detailed, user-defined knowledge schema and an input text, SPIRES recursively performs prompt interrogation against GPT-3+ to obtain a set of responses matching the provided schema. SPIRES uses existing ontologies and vocabularies to provide identifiers for all matched elements. We present examples of use of SPIRES in different domains, including extraction of food recipes, multi-species cellular signaling pathways, disease treatments, multi-step drug mechanisms, and chemical to disease causation graphs. Current SPIRES accuracy is comparable to the mid-range of existing Relation Extraction (RE) methods, but has the advantage of easy customization, flexibility, and, crucially, the ability to perform new tasks in the absence of any training data. This method supports a general strategy of leveraging the language interpreting capabilities of LLMs to assemble knowledge bases, assisting manual knowledge curation and acquisition while supporting validation with publicly-available databases and ontologies external to the LLM. SPIRES is available as part of the open source OntoGPT package: https://github.com/ monarch-initiative/ontogpt.