-- Drug sample comparison is a process used by the French National Police to identify drug distribution networks. The current approach is based on a manual comparison done by forensic experts. In this article, we present our approach to acquire, formalise, and specify expert knowledge to improve the current process. We use an ontology coupled with logical rules to model the underlying knowledge. The different steps of our approach are designed to be reused in other application domains. The results obtained are explainable making them usable by experts in different fields. The fight against drug trafficking has been one of the French government's priorities since the end of 2019 and has led to the creation of the National Stup plan. This plan comprises 55 measures, including the use of new indicators to understand consumer habits and dealers' methods. The work described in this article is part of this plan and aims to support scientific experts in the decision-making process for narcotic profiling. As part of the fight against drug trafficking, several arrests may be made, often accompanied by seizures. Forensic experts perform several analyses on samples from a seizure. They aim to correlate different samples from different seizures to identify trafficking networks best. To do so, experts use sample matching to pair samples according to their characteristics. Paired samples constitute an ensemble called a batch. The sample characteristics used are represented by different data, namely: macroscopic data (e.g., sample dimension, drug logos), qualitative data (e.g., list of active substances), quantitative data (e.g., dosage of substances) or non-confidential seizure data (e.g., date, place of seizure). In France, such data is stored in the national STUPS database.

Generative pre-trained transformer (GPT) models have shown promise in clinical entity and relation extraction tasks because of their precise extraction and contextual understanding capability. In this work, we further leverage the Unified Medical Language System (UMLS) knowledge base to accurately identify medical concepts and improve clinical entity and relation extraction at the document level. Our framework selects UMLS concepts relevant to the text and combines them with prompts to guide language models in extracting entities. Our experiments demonstrate that this initial concept mapping and the inclusion of these mapped concepts in the prompts improves extraction results compared to few-shot extraction tasks on generic language models that do not leverage UMLS. Further, our results show that this approach is more effective than the standard Retrieval Augmented Generation (RAG) technique, where retrieved data is compared with prompt embeddings to generate results. Overall, we find that integrating UMLS concepts with GPT models significantly improves entity and relation identification, outperforming the baseline and RAG models. By combining the precise concept mapping capability of knowledge-based approaches like UMLS with the contextual understanding capability of GPT, our method highlights the potential of these approaches in specialized domains like healthcare.

In response to several cultural heritage initiatives at the Jagiellonian University, we have developed a new digitization workflow in collaboration with the Jagiellonian Library (JL). The solution is based on easy-to-access technological solutions -- Microsoft 365 cloud with MS Excel files as metadata acquisition interfaces, Office Script for validation, and MS Sharepoint for storage -- that allows metadata acquisition by domain experts (philologists, historians, philosophers, librarians, archivists, curators, etc.) regardless of their experience with information systems. The ultimate goal is to create a knowledge graph that describes the analyzed holdings, linked to general knowledge bases, as well as to other cultural heritage collections, so careful attention is paid to the high accuracy of metadata and proper links to external sources. The workflow has already been evaluated in two pilots in the DiHeLib project focused on digitizing the so-called "Berlin Collection" and in two workshops with international guests, which allowed for its refinement and confirmation of its correctness and usability for JL. As the proposed workflow does not interfere with existing systems or domain guidelines regarding digitization and basic metadata collection in a given institution (e.g., file type, image quality, use of Dublin Core/MARC-21), but extends them in order to enable rich metadata collection, not previously possible, we believe that it could be of interest to all GLAMs (galleries, libraries, archives, and museums).

In the following contribution, a method is introduced that integrates domain expert-centric ontology design with the Cross-Industry Standard Process for Data Mining (CRISP-DM). This approach aims to efficiently build an application-specific ontology tailored to the corrective maintenance of Cyber-Physical Systems (CPS). The proposed method is divided into three phases. In phase one, ontology requirements are systematically specified, defining the relevant knowledge scope. Accordingly, CPS life cycle data is contextualized in phase two using domain-specific ontological artifacts. This formalized domain knowledge is then utilized in the CRISP-DM to efficiently extract new insights from the data. Finally, the newly developed data-driven model is employed to populate and expand the ontology. Thus, information extracted from this model is semantically annotated and aligned with the existing ontology in phase three. The applicability of this method has been evaluated in an anomaly detection case study for a modular process plant.

Symptom phenotypes are one of the key types of manifestations for diagnosis and treatment of various disease conditions. However, the diversity of symptom terminologies is one of the major obstacles hindering the analysis and knowledge sharing of various types of symptom-related medical data particularly in the fields of Traditional Chinese Medicine (TCM). Objective: This study aimed to construct an Integrated Ontology of symptom phenotypes (ISPO) to support the data mining of Chinese EMRs and real-world study in TCM field. Methods: To construct an integrated ontology of symptom phenotypes (ISPO), we manually annotated classical TCM textbooks and large-scale Chinese electronic medical records (EMRs) to collect symptom terms with support from a medical text annotation system. Furthermore, to facilitate the semantic interoperability between different terminologies, we incorporated public available biomedical vocabularies by manual mapping between Chinese terms and English terms with cross-references to source vocabularies. In addition, we evaluated the ISPO using independent clinical EMRs to provide a high-usable medical ontology for clinical data analysis. Results: By integrating 78,696 inpatient cases of EMRs, 5 biomedical vocabularies, 21 TCM books and dictionaries, ISPO provides 3,147 concepts, 23,475 terms, and 55,552 definition or contextual texts. Adhering to the taxonomical structure of the related anatomical systems of symptom phenotypes, ISPO provides 12 top-level categories and 79 middle-level sub-categories. The validation of data analysis showed the ISPO has a coverage rate of 95.35%, 98.53% and 92.66% for symptom terms with occurrence rates of 0.5% in additional three independent curated clinical datasets, which can demonstrate the significant value of ISPO in mapping clinical terms to ontologies.

A common solution to the semantic heterogeneity problem is to perform knowledge graph (KG) extension exploiting the information encoded in one or more candidate KGs, where the alignment between the reference KG and candidate KGs is considered the critical procedure. However, existing KG alignment methods mainly rely on entity type (etype) label matching as a prerequisite, which is poorly performing in practice or not applicable in some cases. In this paper, we design a machine learning-based framework for KG extension, including an alternative novel property-based alignment approach that allows aligning etypes on the basis of the properties used to define them. The main intuition is that it is properties that intentionally define the etype, and this definition is independent of the specific label used to name an etype, and of the specific hierarchical schema of KGs. Compared with the state-of-the-art, the experimental results show the validity of the KG alignment approach and the superiority of the proposed KG extension framework, both quantitatively and qualitatively.

The integration of Artificial Intelligence (AI) into automation systems has the potential to enhance efficiency and to address currently unsolved existing technical challenges. However, the industry-wide adoption of AI is hindered by the lack of standardized documentation for the complex compositions of automation systems, AI software, production hardware, and their interdependencies. This paper proposes a formal model using standards and ontologies to provide clear and structured documentation of AI applications in automation systems. The proposed information model for artificial intelligence in automation systems (AIAS) utilizes ontology design patterns to map and link various aspects of automation systems and AI software. Validated through a practical example, the model demonstrates its effectiveness in improving documentation practices and aiding the sustainable implementation of AI in industrial settings.

Capability ontologies are increasingly used to model functionalities of systems or machines. The creation of such ontological models with all properties and constraints of capabilities is very complex and can only be done by ontology experts. However, Large Language Models (LLMs) have shown that they can generate machine-interpretable models from natural language text input and thus support engineers / ontology experts. Therefore, this paper investigates how LLMs can be used to create capability ontologies. We present a study with a series of experiments in which capabilities with varying complexities are generated using different prompting techniques and with different LLMs. Errors in the generated ontologies are recorded and compared. To analyze the quality of the generated ontologies, a semi-automated approach based on RDF syntax checking, OWL reasoning, and SHACL constraints is used. The results of this study are very promising because even for complex capabilities, the generated ontologies are almost free of errors.

The breakthroughs and benefits attributed to big data and, consequently, to machine learning (ML) - or AIsystems [1, 2], have also resulted in making prevalent how these systems are capable of producing unexpected, biased, and in some cases, undesirable output [3, 4, 5]. Seminal work on bias (i.e., prejudice for, or against one person, or group, especially in a way considered to be unfair) in the context of ML systems demonstrates how facial recognition tools and popular search engines can exacerbate demographic disparities, worsening the marginalization of minorities at the individual and group level [6, 7]. Further, biases in news recommenders and social media feeds actively play a role in conditioning and manipulating people's behavior and amplifying individual and public opinion polarization [8, 9]. In this context, the last few years have seen the consolidation of the Trustworthy AI framework, led in large part by regulatory bodies [10], with the objective of guiding commercial AI development to proactively account for ethical, legal, and technical dimensions [11]. Furthermore, this framework is also accompanied by the call to establish standards across the field in order to ensure AI systems are safe, secure and fair upon deployment [11]. In terms of AI bias, many efforts have been concentrated in devising methods that can improve its identification, understanding, measurement, and mitigation [12]. For example, the special publication prepared by the National Institute of Standards and Technology (NIST) proposes a thorough, however not exhaustive, categorization of different types of bias in AI beyond common computational definitions (see Figure 1 for core hierarchy) [13]. In this same direction, some scholars advocate for practices that account for the characteristics of ML pipelines (i.e., datasets, ML algorithms, and user interaction loop) [14] to enable actors concerned with its research, development, regulation, and use, to inspect all the actions performed across the engineering process, with the objective to increase trust placed not only on the development processes, but on the systems themselves [15, 16, 17, 18].

Sustainable Development Goals (SDGs) give the UN a road map for development with Agenda 2030 as a target. SDG3 "Good Health and Well-Being" ensures healthy lives and promotes well-being for all ages. Digital technologies can support SDG3. Burnout and even depression could be reduced by encouraging better preventive health. Due to the lack of patient knowledge and focus to take care of their health, it is necessary to help patients before it is too late. New trends such as positive psychology and mindfulness are highly encouraged in the USA. Digital Twin (DT) can help with the continuous monitoring of emotion using physiological signals (e.g., collected via wearables). Digital twins facilitate monitoring and provide constant health insight to improve quality of life and well-being with better personalization. Healthcare DT challenges are standardizing data formats, communication protocols, and data exchange mechanisms. To achieve those data integration and knowledge challenges, we designed the Mental Health Knowledge Graph (ontology and dataset) to boost mental health. The Knowledge Graph (KG) acquires knowledge from ontology-based mental health projects classified within the LOV4IoT ontology catalog (Emotion, Depression, and Mental Health). Furthermore, the KG is mapped to standards (e.g., ontologies) when possible. Standards from ETSI SmartM2M, ITU/WHO, ISO, W3C, NIST, and IEEE are relevant to mental health.