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 Ontologies


Automated Construction of Medical Indicator Knowledge Graphs Using Retrieval Augmented Large Language Models

arXiv.org Artificial Intelligence

Artificial intelligence (AI) is reshaping modern healthcare by advancing disease diagnosis, treatment decision-making, and biomedical research. Among AI technologies, large language models (LLMs) have become especially impactful, enabling deep knowledge extraction and semantic reasoning from complex medical texts. However, effective clinical decision support requires knowledge in structured, interoperable formats. Knowledge graphs serve this role by integrating heterogeneous medical information into semantically consistent networks. Yet, current clinical knowledge graphs still depend heavily on manual curation and rule-based extraction, which is limited by the complexity and contextual ambiguity of medical guidelines and literature. To overcome these challenges, we propose an automated framework that combines retrieval-augmented generation (RAG) with LLMs to construct medical indicator knowledge graphs. The framework incorporates guideline-driven data acquisition, ontology-based schema design, and expert-in-the-loop validation to ensure scalability, accuracy, and clinical reliability. The resulting knowledge graphs can be integrated into intelligent diagnosis and question-answering systems, accelerating the development of AI-driven healthcare solutions.


An Ontology-Based Approach to Optimizing Geometry Problem Sets for Skill Development

arXiv.org Artificial Intelligence

Euclidean geometry has historically played a central role in cultivating logical reasoning and abstract thinking within mathematics education, but has experienced waning emphasis in recent curricula. The resurgence of interest, driven by advances in artificial intelligence and educational technology, has highlighted geometry's potential to develop essential cognitive skills and inspired new approaches to automated problem solving and proof verification. This article presents an ontology-based framework for annotating and optimizing geometry problem sets, originally developed in the 1990s. The ontology systematically classifies geometric problems, solutions, and associated skills into interlinked facts, objects, and methods, supporting granular tracking of student abilities and facilitating curriculum design. The core concept of 'solution graphs'--directed acyclic graphs encoding multiple solution pathways and skill dependencies--enables alignment of problem selection with instructional objectives. We hypothesize that this framework also points toward automated solution validation via semantic parsing. We contend that our approach addresses longstanding challenges in representing dynamic, procedurally complex mathematical knowledge, paving the way for adaptive, feedback-rich educational tools. Our methodology offers a scalable, adaptable foundation for future advances in intelligent geometry education and automated reasoning.


Can You Tell the Difference? Contrastive Explanations for ABox Entailments

arXiv.org Artificial Intelligence

We introduce the notion of contrastive ABox explanations to answer questions of the type "Why is a an instance of C, but b is not?". While there are various approaches for explaining positive entailments (why is C(a) entailed by the knowledge base) as well as missing entailments (why is C(b) not entailed) in isolation, contrastive explanations consider both at the same time, which allows them to focus on the relevant commonalities and differences between a and b. We develop an appropriate notion of contrastive explanations for the special case of ABox reasoning with description logic ontologies, and analyze the computational complexity for different variants under different optimality criteria, considering lightweight as well as more expressive description logics. We implemented a first method for computing one variant of contrastive explanations, and evaluated it on generated problems for realistic knowledge bases.


AI Agent-Driven Framework for Automated Product Knowledge Graph Construction in E-Commerce

arXiv.org Artificial Intelligence

The rapid expansion of e-commerce platforms generates vast amounts of unstructured product data, creating significant challenges for information retrieval, recommendation systems, and data analytics. Knowledge Graphs (KGs) offer a structured, interpretable format to organize such data, yet constructing product-specific KGs remains a complex and manual process. This paper introduces a fully automated, AI agent-driven framework for constructing product knowledge graphs directly from unstructured product descriptions. Leveraging Large Language Models (LLMs), our method operates in three stages using dedicated agents: ontology creation and expansion, ontology refinement, and knowledge graph population. This agent-based approach ensures semantic coherence, scalability, and high-quality output without relying on predefined schemas or handcrafted extraction rules. We evaluate the system on a real-world dataset of air conditioner product descriptions, demonstrating strong performance in both ontology generation and KG population. The framework achieves over 97\% property coverage and minimal redundancy, validating its effectiveness and practical applicability. Our work highlights the potential of LLMs to automate structured knowledge extraction in retail, providing a scalable path toward intelligent product data integration and utilization.


MedPath: Multi-Domain Cross-Vocabulary Hierarchical Paths for Biomedical Entity Linking

arXiv.org Artificial Intelligence

Progress in biomedical Named Entity Recognition (NER) and Entity Linking (EL) is currently hindered by a fragmented data landscape, a lack of resources for building explainable models, and the limitations of semantically-blind evaluation metrics. To address these challenges, we present MedPath, a large-scale and multi-domain biomedical EL dataset that builds upon nine existing expert-annotated EL datasets. In MedPath, all entities are 1) normalized using the latest version of the Unified Medical Language System (UMLS), 2) augmented with mappings to 62 other biomedical vocabularies and, crucially, 3) enriched with full ontological paths -- i.e., from general to specific -- in up to 11 biomedical vocabularies. MedPath directly enables new research frontiers in biomedical NLP, facilitating training and evaluation of semantic-rich and interpretable EL systems, and the development of the next generation of interoperable and explainable clinical NLP models.


Modeling the Diachronic Evolution of Legal Norms: An LRMoo-Based, Component-Level, Event-Centric Approach to Legal Knowledge Graphs

arXiv.org Artificial Intelligence

Representing the temporal evolution of legal norms is a critical challenge for automated processing. While foundational frameworks exist, they lack a formal pattern for granular, component-level versioning, hindering the deterministic point-in-time reconstruction of legal texts required by reliable AI applications. This paper proposes a structured, temporal modeling pattern grounded in the LRMoo ontology. Our approach models a norm's evolution as a diachronic chain of versioned F1 Works, distinguishing between language-agnostic Temporal Versions (TV)-each being a distinct Work-and their monolingual Language Versions (LV), modeled as F2 Expressions. The legislative amendment process is formalized through event-centric modeling, allowing changes to be traced precisely. Using the Brazilian Constitution as a case study, we demonstrate that our architecture enables the exact reconstruction of any part of a legal text as it existed on a specific date. This provides a verifiable semantic backbone for legal knowledge graphs, offering a deterministic foundation for trustworthy legal AI.


Extending the SAREF4ENER Ontology with Flexibility Based on FlexOffers

arXiv.org Artificial Intelligence

A key element to support the increased amounts of renewable energy in the energy system is flexibility, i.e., the possibility of changing energy loads in time and amount. Many flexibility models have been designed; however, exact models fail to scale for long time horizons or many devices. Because of this, the FlexOffers model has been designed, to provide device-independent approximations of flexibility with good accuracy, and much better scaling for long time horizons and many devices. An important aspect of the real-life implementation of energy flexibility is enabling flexible data exchange with many smart energy appliances and market systems, e.g., in smart buildings. For this, ontologies standardizing data formats are required. However, the current industry standard ontology for integrating smart devices for energy purposes, SAREF for Energy Flexibility (SAREF4ENER), only has limited support for flexibility and thus cannot support important use cases. In this paper, we propose an extension of SAREF4ENER that integrates full support for the complete FlexOffer model, including advanced use cases, while maintaining backward compatibility. This novel ontology module can accurately describe flexibility for advanced devices such as electric vehicles, batteries, and heat pumps. It can also capture the inherent uncertainty associated with many flexible load types.


Knowledge Graphs Generation from Cultural Heritage Texts: Combining LLMs and Ontological Engineering for Scholarly Debates

arXiv.org Artificial Intelligence

Cultural Heritage texts contain rich knowledge that is difficult to query systematically due to the challenges of converting unstructured discourse into structured Knowledge Graphs (KGs). This paper introduces ATR4CH (Adaptive Text-to-RDF for Cultural Heritage), a systematic five-step methodology for Large Language Model-based Knowledge Extraction from Cultural Heritage documents. We validate the methodology through a case study on authenticity assessment debates. Methodology - ATR4CH combines annotation models, ontological frameworks, and LLM-based extraction through iterative development: foundational analysis, annotation schema development, pipeline architecture, integration refinement, and comprehensive evaluation. We demonstrate the approach using Wikipedia articles about disputed items (documents, artifacts...), implementing a sequential pipeline with three LLMs (Claude Sonnet 3.7, Llama 3.3 70B, GPT-4o-mini). Findings - The methodology successfully extracts complex Cultural Heritage knowledge: 0.96-0.99 F1 for metadata extraction, 0.7-0.8 F1 for entity recognition, 0.65-0.75 F1 for hypothesis extraction, 0.95-0.97 for evidence extraction, and 0.62 G-EVAL for discourse representation. Smaller models performed competitively, enabling cost-effective deployment. Originality - This is the first systematic methodology for coordinating LLM-based extraction with Cultural Heritage ontologies. ATR4CH provides a replicable framework adaptable across CH domains and institutional resources. Research Limitations - The produced KG is limited to Wikipedia articles. While the results are encouraging, human oversight is necessary during post-processing. Practical Implications - ATR4CH enables Cultural Heritage institutions to systematically convert textual knowledge into queryable KGs, supporting automated metadata enrichment and knowledge discovery.


Remodeling Semantic Relationships in Vision-Language Fine-Tuning

arXiv.org Artificial Intelligence

Vision-language fine-tuning has emerged as an efficient paradigm for constructing multimodal foundation models. While textual context often highlights semantic relationships within an image, existing fine-tuning methods typically overlook this information when aligning vision and language, thus leading to suboptimal performance. T oward solving this problem, we propose a method that can improve multimodal alignment and fusion based on both semantics and relationships. Specifically, we first extract multilevel semantic features from different vision encoder to capture more visual cues of the relationships. Then, we learn to project the vision features to group related semantics, among which are more likely to have relationships. Finally, we fuse the visual features with the textual by using inheritable cross-attention, where we globally remove the redundant visual relationships by discarding visual-language feature pairs with low correlation. W e evaluate our proposed method on eight foundation models and two downstream tasks, visual question answering and image captioning, and show that it outperforms all existing methods.


About the Unreal

arXiv.org Artificial Intelligence

This paper introduces a framework for representing information about entities that do not exist or may never exist, such as those involving fictional entities, blueprints, simulations, and future scenarios. Traditional approaches that introduce "dummy instances" or rely on modal logic are criticized, and a proposal is defended in which such cases are modeled using the intersections of actual types rather than specific non existent tokens. The paper positions itself within the Basic Formal Ontology and its realist commitments, emphasizing the importance of practical, implementable solutions over purely metaphysical or philosophical proposals, arguing that existing approaches to non existent entities either overcommit to metaphysical assumptions or introduce computational inefficiencies that hinder applications. By developing a structured ontology driven approach to unreal patterns, the paper aims to provide a useful and computationally viable means of handling references to hypothetical or non existent entities.