Ontologies
Generating Natural-Language Surgical Feedback: From Structured Representation to Domain-Grounded Evaluation
Nasriddinov, Firdavs, Kocielnik, Rafal, Anandkumar, Anima, Hung, Andrew J.
High-quality intraoperative feedback from a surgical trainer is pivotal for improving trainee performance and long-term skill acquisition. Automating natural, trainer-style feedback promises timely, accessible, and consistent guidance at scale but requires models that understand clinically relevant representations. We present a structure-aware pipeline that learns a surgical action ontology from real trainer-to-trainee transcripts (33 surgeries) and uses it to condition feedback generation. We contribute by (1) mining Instrument-Action-Target (IAT) triplets from real-world feedback text and clustering surface forms into normalized categories, (2) fine-tuning a video-to-IAT model that leverages the surgical procedure and task contexts as well as fine-grained temporal instrument motion, and (3) demonstrating how to effectively use IAT triplet representations to guide GPT-4o in generating clinically grounded, trainer-style feedback. We show that, on Task 1: Video-to-IAT recognition, our context injection and temporal tracking deliver consistent AUC gains (Instrument: 0.67 to 0.74; Action: 0.60 to 0.63; Tissue: 0.74 to 0.79). For Task 2: feedback text generation (rated on a 1-5 fidelity rubric where 1 = opposite/unsafe, 3 = admissible, and 5 = perfect match to a human trainer), GPT-4o from video alone scores 2.17, while IAT conditioning reaches 2.44 (+12.4%), doubling the share of admissible generations with score >= 3 from 21% to 42%. Traditional text-similarity metrics also improve: word error rate decreases by 15-31% and ROUGE (phrase/substring overlap) increases by 9-64%. Grounding generation in explicit IAT structure improves fidelity and yields clinician-verifiable rationales, supporting auditable use in surgical training.
Behavior Trees vs Executable Ontologies: a Comparative Analysis of Robot Control Paradigms
This paper compares two distinct approaches to modeling robotic behavior: imperative Behavior Trees (BTs) and declarative Executable Ontologies (EO), implemented through the boldsea framework. BTs structure behavior hierarchically using control-flow, whereas EO represents the domain as a temporal, event-based semantic graph driven by dataflow rules. We demonstrate that EO achieves comparable reactivity and modularity to BTs through a fundamentally different architecture: replacing polling-based tick execution with event-driven state propagation. We propose that EO offers an alternative framework, moving from procedural programming to semantic domain modeling, to address the semantic-process gap in traditional robotic control. EO supports runtime model modification, full temporal traceability, and a unified representation of data, logic, and interface - features that are difficult or sometimes impossible to achieve with BTs, although BTs excel in established, predictable scenarios. The comparison is grounded in a practical mobile manipulation task. This comparison highlights the respective operational strengths of each approach in dynamic, evolving robotic systems.
VSPO: Validating Semantic Pitfalls in Ontology via LLM-Based CQ Generation
Choi, Hyojun, Hwang, Seokju, Lee, Kyong-Ho
Competency Questions (CQs) play a crucial role in validating ontology design. While manually crafting CQs can be highly time-consuming and costly for ontology engineers, recent studies have explored the use of large language models (LLMs) to automate this process. However, prior approaches have largely evaluated generated CQs based on their similarity to existing datasets, which often fail to verify semantic pitfalls such as "Misusing allValuesFrom". Since such pitfalls cannot be reliably detected through rule-based methods, we propose a novel dataset and model of Validating Semantic Pitfalls in Ontology (VSPO) for CQ generation specifically designed to verify the semantic pitfalls. To simulate missing and misused axioms, we use LLMs to generate natural language definitions of classes and properties and introduce misalignments between the definitions and the ontology by removing axioms or altering logical operators (e.g., substituting union with intersection). We then fine-tune LLaMA-3.1-8B-Instruct to generate CQs that validate these semantic discrepancies between the provided definitions and the corresponding axioms. The resulting CQs can detect a broader range of modeling errors compared to existing public datasets. Our fine-tuned model demonstrates superior performance over baselines, showing 26% higher precision and 28.2% higher recall than GPT-4.1 in generating CQs for pitfall validation. This research enables automatic generation of TBox-validating CQs using LLMs, significantly reducing manual effort while improving semantic alignment between ontologies and expert knowledge. To the best of our knowledge, this is the first study to target semantic pitfall validation in CQ generation using LLMs.
Automated Construction of Medical Indicator Knowledge Graphs Using Retrieval Augmented Large Language Models
Wang, Zhengda, Shi, Daqian, Zhao, Jingyi, Diao, Xiaolei, Tang, Xiongfeng, Qin, Yanguo
Artificial intelligence (AI) is reshaping modern healthcare by advancing disease diagnosis, treatment decision-making, and biomedical research. Among AI technologies, large language models (LLMs) have become especially impactful, enabling deep knowledge extraction and semantic reasoning from complex medical texts. However, effective clinical decision support requires knowledge in structured, interoperable formats. Knowledge graphs serve this role by integrating heterogeneous medical information into semantically consistent networks. Yet, current clinical knowledge graphs still depend heavily on manual curation and rule-based extraction, which is limited by the complexity and contextual ambiguity of medical guidelines and literature. To overcome these challenges, we propose an automated framework that combines retrieval-augmented generation (RAG) with LLMs to construct medical indicator knowledge graphs. The framework incorporates guideline-driven data acquisition, ontology-based schema design, and expert-in-the-loop validation to ensure scalability, accuracy, and clinical reliability. The resulting knowledge graphs can be integrated into intelligent diagnosis and question-answering systems, accelerating the development of AI-driven healthcare solutions.
An Ontology-Based Approach to Optimizing Geometry Problem Sets for Skill Development
Bouzinier, Michael, Trifonov, Sergey, Chen, Matthew, Venkatesh, Tarun, Rifkin, Lielle
Euclidean geometry has historically played a central role in cultivating logical reasoning and abstract thinking within mathematics education, but has experienced waning emphasis in recent curricula. The resurgence of interest, driven by advances in artificial intelligence and educational technology, has highlighted geometry's potential to develop essential cognitive skills and inspired new approaches to automated problem solving and proof verification. This article presents an ontology-based framework for annotating and optimizing geometry problem sets, originally developed in the 1990s. The ontology systematically classifies geometric problems, solutions, and associated skills into interlinked facts, objects, and methods, supporting granular tracking of student abilities and facilitating curriculum design. The core concept of 'solution graphs'--directed acyclic graphs encoding multiple solution pathways and skill dependencies--enables alignment of problem selection with instructional objectives. We hypothesize that this framework also points toward automated solution validation via semantic parsing. We contend that our approach addresses longstanding challenges in representing dynamic, procedurally complex mathematical knowledge, paving the way for adaptive, feedback-rich educational tools. Our methodology offers a scalable, adaptable foundation for future advances in intelligent geometry education and automated reasoning.
Can You Tell the Difference? Contrastive Explanations for ABox Entailments
Koopmann, Patrick, Mahmood, Yasir, Ngomo, Axel-Cyrille Ngonga, Tiwari, Balram
We introduce the notion of contrastive ABox explanations to answer questions of the type "Why is a an instance of C, but b is not?". While there are various approaches for explaining positive entailments (why is C(a) entailed by the knowledge base) as well as missing entailments (why is C(b) not entailed) in isolation, contrastive explanations consider both at the same time, which allows them to focus on the relevant commonalities and differences between a and b. We develop an appropriate notion of contrastive explanations for the special case of ABox reasoning with description logic ontologies, and analyze the computational complexity for different variants under different optimality criteria, considering lightweight as well as more expressive description logics. We implemented a first method for computing one variant of contrastive explanations, and evaluated it on generated problems for realistic knowledge bases.
AI Agent-Driven Framework for Automated Product Knowledge Graph Construction in E-Commerce
Peshevski, Dimitar, Stojanov, Riste, Trajanov, Dimitar
The rapid expansion of e-commerce platforms generates vast amounts of unstructured product data, creating significant challenges for information retrieval, recommendation systems, and data analytics. Knowledge Graphs (KGs) offer a structured, interpretable format to organize such data, yet constructing product-specific KGs remains a complex and manual process. This paper introduces a fully automated, AI agent-driven framework for constructing product knowledge graphs directly from unstructured product descriptions. Leveraging Large Language Models (LLMs), our method operates in three stages using dedicated agents: ontology creation and expansion, ontology refinement, and knowledge graph population. This agent-based approach ensures semantic coherence, scalability, and high-quality output without relying on predefined schemas or handcrafted extraction rules. We evaluate the system on a real-world dataset of air conditioner product descriptions, demonstrating strong performance in both ontology generation and KG population. The framework achieves over 97\% property coverage and minimal redundancy, validating its effectiveness and practical applicability. Our work highlights the potential of LLMs to automate structured knowledge extraction in retail, providing a scalable path toward intelligent product data integration and utilization.
MedPath: Multi-Domain Cross-Vocabulary Hierarchical Paths for Biomedical Entity Linking
Mishra, Nishant, Aziz, Wilker, Calixto, Iacer
Progress in biomedical Named Entity Recognition (NER) and Entity Linking (EL) is currently hindered by a fragmented data landscape, a lack of resources for building explainable models, and the limitations of semantically-blind evaluation metrics. To address these challenges, we present MedPath, a large-scale and multi-domain biomedical EL dataset that builds upon nine existing expert-annotated EL datasets. In MedPath, all entities are 1) normalized using the latest version of the Unified Medical Language System (UMLS), 2) augmented with mappings to 62 other biomedical vocabularies and, crucially, 3) enriched with full ontological paths -- i.e., from general to specific -- in up to 11 biomedical vocabularies. MedPath directly enables new research frontiers in biomedical NLP, facilitating training and evaluation of semantic-rich and interpretable EL systems, and the development of the next generation of interoperable and explainable clinical NLP models.
Modeling the Diachronic Evolution of Legal Norms: An LRMoo-Based, Component-Level, Event-Centric Approach to Legal Knowledge Graphs
Representing the temporal evolution of legal norms is a critical challenge for automated processing. While foundational frameworks exist, they lack a formal pattern for granular, component-level versioning, hindering the deterministic point-in-time reconstruction of legal texts required by reliable AI applications. This paper proposes a structured, temporal modeling pattern grounded in the LRMoo ontology. Our approach models a norm's evolution as a diachronic chain of versioned F1 Works, distinguishing between language-agnostic Temporal Versions (TV)-each being a distinct Work-and their monolingual Language Versions (LV), modeled as F2 Expressions. The legislative amendment process is formalized through event-centric modeling, allowing changes to be traced precisely. Using the Brazilian Constitution as a case study, we demonstrate that our architecture enables the exact reconstruction of any part of a legal text as it existed on a specific date. This provides a verifiable semantic backbone for legal knowledge graphs, offering a deterministic foundation for trustworthy legal AI.
Extending the SAREF4ENER Ontology with Flexibility Based on FlexOffers
Lilliu, Fabio, Laadhar, Amir, Thomsen, Christian, Recupero, Diego Reforgiato, Pedersen, Torben Bach
A key element to support the increased amounts of renewable energy in the energy system is flexibility, i.e., the possibility of changing energy loads in time and amount. Many flexibility models have been designed; however, exact models fail to scale for long time horizons or many devices. Because of this, the FlexOffers model has been designed, to provide device-independent approximations of flexibility with good accuracy, and much better scaling for long time horizons and many devices. An important aspect of the real-life implementation of energy flexibility is enabling flexible data exchange with many smart energy appliances and market systems, e.g., in smart buildings. For this, ontologies standardizing data formats are required. However, the current industry standard ontology for integrating smart devices for energy purposes, SAREF for Energy Flexibility (SAREF4ENER), only has limited support for flexibility and thus cannot support important use cases. In this paper, we propose an extension of SAREF4ENER that integrates full support for the complete FlexOffer model, including advanced use cases, while maintaining backward compatibility. This novel ontology module can accurately describe flexibility for advanced devices such as electric vehicles, batteries, and heat pumps. It can also capture the inherent uncertainty associated with many flexible load types.