In this paper we focus on the opacity issue of sub-symbolic machine learning predictors by promoting two complementary activities, namely, symbolic knowledge extraction (SKE) and injection (SKI) from and into sub-symbolic predictors. We consider as symbolic any language being intelligible and interpretable for both humans and computers. Accordingly, we propose general meta-models for both SKE and SKI, along with two taxonomies for the classification of SKE and SKI methods. By adopting an explainable artificial intelligence (XAI) perspective, we highlight how such methods can be exploited to mitigate the aforementioned opacity issue. Our taxonomies are attained by surveying and classifying existing methods from the literature, following a systematic approach, and by generalising the results of previous surveys targeting specific sub-topics of either SKE or SKI alone. More precisely, we analyse 132 methods for SKE and 117 methods for SKI, and we categorise them according to their purpose, operation, expected input/output data and predictor types. For each method, we also indicate the presence/lack of runnable software implementations. Our work may be of interest for data scientists aiming at selecting the most adequate SKE/SKI method for their needs, and also work as suggestions for researchers interested in filling the gaps of the current state of the art, as well as for developers willing to implement SKE/SKI-based technologies.

Humans acquire knowledge through three cognitive stages: perceiving information, comprehending knowledge, and adapting knowledge to solve novel problems. Videos serve as an effective medium for this learning process, facilitating a progression through these cognitive stages. However, existing video benchmarks fail to systematically evaluate the knowledge acquisition capabilities in Large Multimodal Models (LMMs). To address this gap, we introduce Video-MMMU, a multi-modal, multi-disciplinary benchmark designed to assess LMMs' ability to acquire and utilize knowledge from videos. Video-MMMU features a curated collection of 300 expert-level videos and 900 human-annotated questions across six disciplines, evaluating knowledge acquisition through stage-aligned question-answer pairs: Perception, Comprehension, and Adaptation. A proposed knowledge gain metric, {\Delta}knowledge, quantifies improvement in performance after video viewing. Evaluation of LMMs reveals a steep decline in performance as cognitive demands increase and highlights a significant gap between human and model knowledge acquisition, underscoring the need for methods to enhance LMMs' capability to learn and adapt from videos.

Biomedical knowledge graphs (BKGs) have emerged as powerful tools for organizing and leveraging the vast and complex data found across the biomedical field. Yet, current reviews of BKGs often limit their scope to specific domains or methods, overlooking the broader landscape and the rapid technological progress reshaping it. In this survey, we address this gap by offering a systematic review of BKGs from three core perspectives: domains, tasks, and applications. We begin by examining how BKGs are constructed from diverse data sources, including molecular interactions, pharmacological datasets, and clinical records. Next, we discuss the essential tasks enabled by BKGs, focusing on knowledge management, retrieval, reasoning, and interpretation. Finally, we highlight real-world applications in precision medicine, drug discovery, and scientific research, illustrating the translational impact of BKGs across multiple sectors. By synthesizing these perspectives into a unified framework, this survey not only clarifies the current state of BKG research but also establishes a foundation for future exploration, enabling both innovative methodological advances and practical implementations.

This paper solves the task of knowledge base completion i.e. filling the missing relations between two entities by combining Statistical Relational Model like Markov Logic, and knowledge graph embedding method like TransE. Authors define a set of rules to be used in MLNs and then define a joint probability distribution over the observed and hidden triplets. Similarly, they define a joint probability distribution using KGE approaches (specifically they chose transE model). Then they employ the variational EM algorithm to learn the MLN weights and finally predicting the probabilities of hidden triplets. Originality: I really liked the paper, and enjoyed thoroughly reading it.

Rule sets are highly interpretable logical models in which the predicates for decision are expressed in disjunctive normal form (DNF, OR-of-ANDs), or, equivalently, the overall model comprises an unordered collection of if-then decision rules. In this paper, we consider a submodular optimization based approach for learning rule sets. The learning problem is framed as a subset selection task in which a subset of all possible rules needs to be selected to form an accurate and interpretable rule set. We employ an objective function that exhibits submodularity and thus is amenable to submodular optimization techniques. To overcome the difficulty arose from dealing with the exponential-sized ground set of rules, the subproblem of searching a rule is casted as another subset selection task that asks for a subset of features.

To utilize the raw inputs and symbolic knowledge simultaneously, some recent neuro-symbolic learning methods use abduction, i.e., abductive reasoning, to integrate sub-symbolic perception and logical inference. While the perception model, e.g., a neural network, outputs some facts that are inconsistent with the symbolic background knowledge base, abduction can help revise the incorrect perceived facts by minimizing the inconsistency between them and the background knowledge. However, to enable effective abduction, previous approaches need an initialized perception model that discriminates the input raw instances. This limits the application of these methods, as the discrimination ability is usually acquired from a thorough pre-training when the raw inputs are difficult to classify. In this paper, we propose a novel abduction strategy, which leverages the similarity between samples, rather than the output information by the perceptual neural network, to guide the search in abduction. Based on this principle, we further present ABductive Learning with Similarity (ABLSim) and apply it to some difficult neuro-symbolic learning tasks.

To generate evidence regarding the safety and efficacy of artificial intelligence (AI) enabled medical devices, AI models need to be evaluated on a diverse population of patient cases, some of which may not be readily available. We propose an evaluation approach for testing medical imaging AI models that relies on in silico imaging pipelines in which stochastic digital models of human anatomy (in object space) with and without pathology are imaged using a digital replica imaging acquisition system to generate realistic synthetic image datasets. Here, we release M-SYNTH, a dataset of cohorts with four breast fibroglandular density distributions imaged at different exposure levels using Monte Carlo x-ray simulations with the publicly available Virtual Imaging Clinical Trial for Regulatory Evaluation (VICTRE) toolkit. We utilize the synthetic dataset to analyze AI model performance and find that model performance decreases with increasing breast density and increases with higher mass density, as expected. As exposure levels decrease, AI model performance drops with the highest performance achieved at exposure levels lower than the nominal recommended dose for the breast type.

Likewise, the current trend is to produce new resources in a digital format (e.g., in the context of social networks), which entails an in-depth paradigm shift in almost all the humanistic, social, scientific and technological fields. In particular, the field of the humanities is one which is going through a significant transformation as a result of these digitalization efforts and the paradigm shift associated with the digital age. Indeed, we are witnessing the emergence of a whole host of disciplines, those of Digital Humanities (Berry 2012), which are closely dependent on the production and proper organization of digital collections. As a result of the undoubted importance of digital collections in modern society, the search for effective and efficient methods to carry out the production, preservation and enhancement of such digital collections has become a key challenge in modern society (Calhoun, 2013). In particular, the annotation of resources with metadata that enables their proper cataloging, search, retrieval and use in different application scenarios is one of the key elements to ensuring the profitability of these collections of digital objects.

The rapid development of artificial intelligence has brought about substantial advancements in the field. One promising direction is the integration of Large Language Models (LLMs) with structured knowledge-based systems. This approach aims to enhance AI capabilities by combining the generative language understanding of LLMs with the precise knowledge representation of structured systems. This survey explores the synergy between LLMs and knowledge bases, focusing on real-world applications and addressing associated technical, operational, and ethical challenges. Through a comprehensive literature review, the study identifies critical issues and evaluates existing solutions. The paper highlights the benefits of integrating generative AI with knowledge bases, including improved data contextualization, enhanced model accuracy, and better utilization of knowledge resources. The findings provide a detailed overview of the current state of research, identify key gaps, and offer actionable recommendations. These insights contribute to advancing AI technologies and support their practical deployment across various sectors.

In this paper, we propose a new method for knowledge base completion (KBC): instance-based learning (IBL). For example, to answer (Jill Biden, lived city,? Through prototype entities, IBL provides interpretability. We develop theories for modeling prototypes and combining IBL with translational models. Experiments on various tasks confirmed the IBL model's effectiveness and interpretability.In addition, IBL shed light on the mechanism of rule-based KBC models.