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 Large Language Model


Improving LLMs with a knowledge from databases

arXiv.org Artificial Intelligence

Large language models (LLMs) are achieving significant progress almost every moment now. Many advanced techniques have been introduced and widely accepted, like retrieval-augmentation generation (RAG), agents, and tools. Tools can query the database to answer questions from structured data files or perform groupings or other statistics. This unlocks huge opportunities, such as it can answer any question, but also poses threats, such as safety, because there is no control over the commands that are created. We would like to discuss whether we can create a new method that improves answers based on dataset/database via some interpretable ML methods, namely enhanced association rules. The advantage would be if the method can be also used in some safe technique like RAG. Association rules have a sound history. Since the introduction of CN2 and aproiri, many enhancements have been made. In parallel, enhanced association rules have been introduced and evolved over the last 40 years. The general problem is typically that there are too many rules. There are some techniques for handling it, but when LLM emerged, it turned out to be the best use case for the RAG technique for LLMs. We proposed a method that generates a ruleset based on defined knowledge patterns, then converts rules into text form via a rule-to-text converter, and includes the result as an RAG into LLM. We compared this method with ChatGPT (even with using agents) and we have discovered a significant improvement in answering questions based on the dataset. We have also tried several strategies how much rules to generate. We found this improvement interesting. Moreover, it can also be improved in many ways as future work, like incorporating other patterns, the use of rule mining as an agent, and many others.


Using Large Language Models to Simulate Human Behavioural Experiments: Port of Mars

arXiv.org Artificial Intelligence

Collective risk social dilemmas (CRSD) highlight a trade-off between individual preferences and the need for all to contribute toward achieving a group objective. Problems such as climate change are in this category, and so it is critical to understand their social underpinnings. However, rigorous CRSD methodology often demands large-scale human experiments but it is difficult to guarantee sufficient power and heterogeneity over socio-demographic factors. Generative AI offers a potential complementary approach to address thisproblem. By replacing human participants with large language models (LLM), it allows for a scalable empirical framework. This paper focuses on the validity of this approach and whether it is feasible to represent a large-scale human-like experiment with sufficient diversity using LLM. In particular, where previous literature has focused on political surveys, virtual towns and classical game-theoretic examples, we focus on a complex CRSD used in the institutional economics and sustainability literature known as Port of Mars


Agentomics-ML: Autonomous Machine Learning Experimentation Agent for Genomic and Transcriptomic Data

arXiv.org Artificial Intelligence

The adoption of machine learning (ML) and deep learning methods has revolutionized molecular medicine by driving breakthroughs in genomics, transcriptomics, drug discovery, and biological systems modeling. The increasing quantity, multimodality, and heterogeneity of biological datasets demand automated methods that can produce generalizable predictive models. Recent developments in large language model-based agents have shown promise for automating end-to-end ML experimentation on structured benchmarks. However, when applied to heterogeneous computational biology datasets, these methods struggle with generalization and success rates. Here, we introduce Agentomics-ML, a fully autonomous agent-based system designed to produce a classification model and the necessary files for reproducible training and inference. Our method follows predefined steps of an ML experimentation process, repeatedly interacting with the file system through Bash to complete individual steps. Once an ML model is produced, training and validation metrics provide scalar feedback to a reflection step to identify issues such as overfitting. This step then creates verbal feedback for future iterations, suggesting adjustments to steps such as data representation, model architecture, and hyperparameter choices. We have evaluated Agentomics-ML on several established genomic and transcriptomic benchmark datasets and show that it outperforms existing state-of-the-art agent-based methods in both generalization and success rates. While state-of-the-art models built by domain experts still lead in absolute performance on the majority of the computational biology datasets used in this work, Agentomics-ML narrows the gap for fully autonomous systems and achieves state-of-the-art performance on one of the used benchmark datasets. The code is available at https://github.com/BioGeMT/Agentomics-ML.


MORSE-500: A Programmatically Controllable Video Benchmark to Stress-Test Multimodal Reasoning

arXiv.org Artificial Intelligence

Despite rapid advances in vision-language models (VLMs), current benchmarks for multimodal reasoning fall short in three key dimensions. First, they overwhelmingly rely on static images, failing to capture the temporal complexity of real-world environments. Second, they narrowly focus on mathematical problem-solving, neglecting the broader spectrum of reasoning skills -- including abstract, physical, planning, spatial, and temporal capabilities -- required for robust multimodal intelligence. Third, many benchmarks quickly saturate, offering limited headroom for diagnosing failure modes or measuring continued progress. We introduce MORSE-500 (Multimodal Reasoning Stress-test Environment), a video benchmark composed of 500 fully scripted clips with embedded questions spanning six complementary reasoning categories. Each instance is programmatically generated using deterministic Python scripts (via Manim, Matplotlib, MoviePy), generative video models, and curated real footage. This script-driven design allows fine-grained control over visual complexity, distractor density, and temporal dynamics -- enabling difficulty to be scaled systematically as models improve. Unlike static benchmarks that become obsolete once saturated, MORSE-500 is built to evolve: its controllable generation pipeline supports the creation of arbitrarily challenging new instances, making it ideally suited for stress-testing next-generation models. Initial experiments with state-of-the-art systems -- including various Gemini 2.5 Pro and OpenAI o3 which represent the strongest available at the time, alongside strong open-source models -- reveal substantial performance gaps across all categories, with particularly large deficits in abstract and planning tasks. We release the full dataset, generation scripts, and evaluation harness to support transparent, reproducible, and forward-looking multimodal reasoning research.


Beyond the Buzz: A Pragmatic Take on Inference Disaggregation

arXiv.org Artificial Intelligence

As inference scales to multi-node deployments, disaggregation - splitting inference into distinct phases - offers a promising path to improving the throughput-interactivity Pareto frontier. Despite growing enthusiasm and a surge of open-source efforts, practical deployment of disaggregated serving remains limited due to the complexity of the optimization search space and system-level coordination. In this paper, we present the first systematic study of disaggregated inference at scale, evaluating hundreds of thousands of design points across diverse workloads and hardware configurations. We find that disaggregation is most effective for prefill-heavy traffic patterns and larger models. Our results highlight the critical role of dynamic rate matching and elastic scaling in achieving Pareto-optimal performance. Our findings offer actionable insights for efficient disaggregated deployments to navigate the trade-off between system throughput and interactivity.


StealthInk: A Multi-bit and Stealthy Watermark for Large Language Models

arXiv.org Artificial Intelligence

Watermarking for large language models (LLMs) offers a promising approach to identifying AI-generated text. Existing approaches, however, either compromise the distribution of original generated text by LLMs or are limited to embedding zero-bit information that only allows for watermark detection but ignores identification. We present StealthInk, a stealthy multi-bit watermarking scheme that preserves the original text distribution while enabling the embedding of provenance data, such as userID, TimeStamp, and modelID, within LLM-generated text. This enhances fast traceability without requiring access to the language model's API or prompts. We derive a lower bound on the number of tokens necessary for watermark detection at a fixed equal error rate, which provides insights on how to enhance the capacity. Comprehensive empirical evaluations across diverse tasks highlight the stealthiness, detectability, and resilience of StealthInk, establishing it as an effective solution for LLM watermarking applications.


Conformal Prediction Beyond the Seen: A Missing Mass Perspective for Uncertainty Quantification in Generative Models

arXiv.org Artificial Intelligence

Uncertainty quantification (UQ) is essential for safe deployment of generative AI models such as large language models (LLMs), especially in high stakes applications. Conformal prediction (CP) offers a principled uncertainty quantification framework, but classical methods focus on regression and classification, relying on geometric distances or softmax scores: tools that presuppose structured outputs. We depart from this paradigm by studying CP in a query only setting, where prediction sets must be constructed solely from finite queries to a black box generative model, introducing a new trade off between coverage, test time query budget, and informativeness. We introduce Conformal Prediction with Query Oracle (CPQ), a framework characterizing the optimal interplay between these objectives. Our finite sample algorithm is built on two core principles: one governs the optimal query policy, and the other defines the optimal mapping from queried samples to prediction sets. Remarkably, both are rooted in the classical missing mass problem in statistics. Specifically, the optimal query policy depends on the rate of decay, or the derivative, of the missing mass, for which we develop a novel estimator. Meanwhile, the optimal mapping hinges on the missing mass itself, which we estimate using Good Turing estimators. We then turn our focus to implementing our method for language models, where outputs are vast, variable, and often under specified. Fine grained experiments on three real world open ended tasks and two LLMs, show CPQ applicability to any black box LLM and highlight: (1) individual contribution of each principle to CPQ performance, and (2) CPQ ability to yield significantly more informative prediction sets than existing conformal methods for language uncertainty quantification.


Interpretation Meets Safety: A Survey on Interpretation Methods and Tools for Improving LLM Safety

arXiv.org Artificial Intelligence

As large language models (LLMs) see wider real-world use, understanding and mitigating their unsafe behaviors is critical. Interpretation techniques can reveal causes of unsafe outputs and guide safety, but such connections with safety are often overlooked in prior surveys. We present the first survey that bridges this gap, introducing a unified framework that connects safety-focused interpretation methods, the safety enhancements they inform, and the tools that operationalize them. Our novel taxonomy, organized by LLM workflow stages, summarizes nearly 70 works at their intersections. We conclude with open challenges and future directions. This timely survey helps researchers and practitioners navigate key advancements for safer, more interpretable LLMs.


Sentinel: SOTA model to protect against prompt injections

arXiv.org Artificial Intelligence

Large Language Models (LLMs) are increasingly powerful but remain vulnerable to prompt injection attacks, where malicious inputs cause the model to deviate from its intended instructions. This paper introduces Sentinel, a novel detection model, qualifire/prompt-injection-sentinel, based on the \answerdotai/ModernBERT-large architecture. By leveraging ModernBERT's advanced features and fine-tuning on an extensive and diverse dataset comprising a few open-source and private collections, Sentinel achieves state-of-the-art performance. This dataset amalgamates varied attack types, from role-playing and instruction hijacking to attempts to generate biased content, alongside a broad spectrum of benign instructions, with private datasets specifically targeting nuanced error correction and real-world misclassifications. On a comprehensive, unseen internal test set, Sentinel demonstrates an average accuracy of 0.987 and an F1-score of 0.980. Furthermore, when evaluated on public benchmarks, it consistently outperforms strong baselines like protectai/deberta-v3-base-prompt-injection-v2. This work details Sentinel's architecture, its meticulous dataset curation, its training methodology, and a thorough evaluation, highlighting its superior detection capabilities.


BYO-Eval: Build Your Own Dataset for Fine-Grained Visual Assessment of Multimodal Language Models

arXiv.org Artificial Intelligence

Visual Language Models (VLMs) are now sufficiently advanced to support a broad range of applications, including answering complex visual questions, and are increasingly expected to interact with images in varied ways. To evaluate them, current benchmarks often focus on specific domains (e.g., reading charts), constructing datasets of annotated real images paired with pre-defined Multiple Choice Questions (MCQs) to report aggregate accuracy scores. However, such benchmarks entail high annotation costs, risk information leakage, and do not clarify whether failures stem from limitations in visual perception, reasoning, or general knowledge. We propose a new evaluation methodology, inspired by ophthalmologic diagnostics, leveraging procedural generation of synthetic images to obtain control over visual attributes and precisely reveal perception failures in VLMs. Specifically, we build collections of images with gradually more challenging variations in the content of interest (e.g., number of objects in a counting task) while holding other visual parameters constant. This diagnostic allows systematic stress testing and fine-grained failure analysis, shifting the focus from coarse benchmarking toward targeted and interpretable assessment of VLM capabilities. Our code is available at https://github.com/byoeval/BYO-EVAL.