Relation Extraction (RE), the task of detecting and characterizing semantic relations between entities in text, has gained much importance in the last two decades, mainly in the biomedical domain. Many papers have been published on Relation Extraction using supervised machine learning techniques. Most of these techniques rely on statistical methods, such as feature-based and tree-kernels-based methods. Such statistical learning techniques are usually based on a propositional hypothesis space for representing examples, i.e., they employ an attribute-value representation of features. This kind of representation has some drawbacks, particularly in the extraction of complex relations which demand more contextual information about the involving instances, i.e., it is not able to effectively capture structural information from parse trees without loss of information. In this work, we present OntoILPER, a logic-based relational learning approach to Relation Extraction that uses Inductive Logic Programming for generating extraction models in the form of symbolic extraction rules. OntoILPER takes profit of a rich relational representation of examples, which can alleviate the aforementioned drawbacks. The proposed relational approach seems to be more suitable for Relation Extraction than statistical ones for several reasons that we argue. Moreover, OntoILPER uses a domain ontology that guides the background knowledge generation process and is used for storing the extracted relation instances. The induced extraction rules were evaluated on three protein-protein interaction datasets from the biomedical domain. The performance of OntoILPER extraction models was compared with other state-of-the-art RE systems. The encouraging results seem to demonstrate the effectiveness of the proposed solution.

Prior work inspired by compression algorithms has described how the Burrows Wheeler Transform can be used to create a distance measure for bioinformatics problems. We describe issues with this approach that were not widely known, and introduce our new Burrows Wheeler Markov Distance (BWMD) as an alternative. The BWMD avoids the shortcomings of earlier efforts, and allows us to tackle problems in variable length DNA sequence clustering. BWMD is also more adaptable to other domains, which we demonstrate on malware classification tasks. Unlike other compression-based distance metrics known to us, BWMD works by embedding sequences into a fixed-length feature vector. This allows us to provide significantly improved clustering performance on larger malware corpora, a weakness of prior methods.

Reeb spaces, as well as their discretized versions called Mappers, are common descriptors used in Topological Data Analysis, with plenty of applications in various fields of science, such as computational biology and data visualization, among others. The stability and quantification of the rate of convergence of the Mapper to the Reeb space has been studied a lot in recent works~\cite{Brown2019, Carriere2018a, Carriere2018, Munch2016}, focusing on the case where a scalar-valued filter is used for the computation of Mapper. On the other hand, much less is known in the multivariate case, where the domain of the filter is in $\mathbb R^d$ instead of $\mathbb R$. The only available result in this setting~\cite{Munch2016} only works for topological spaces and cannot be used as is for finite metric spaces representing data, such as point clouds and distance matrices. In this article, we present an approximation result for the Reeb space in the multivariate case using a Mapper-based estimator, which is a slight modification of the usual Mapper construction. Moreover, our approximation is stated with respect to a pseudometric that is an extension of the usual {\em interleaving distance} between persistence modules~\cite{Chazal2016}. Finally, we apply our results to the case where the filter function used to compute the Mapper is estimated from the data. We provide applications of this setting in statistics and machine learning and probability for different kinds of target filters, as well as numerical experiments that demonstrate the relevance of our approach.

We consider the problem of learning generalized first-order representations of concepts from a single example. To address this challenging problem, we augment an inductive logic programming learner with two novel algorithmic contributions. First, we define a distance measure between candidate concept representations that improves the efficiency of search for target concept and generalization. Second, we leverage richer human inputs in the form of advice to improve the sample-efficiency of learning. We prove that the proposed distance measure is semantically valid and use that to derive a P AC bound. Our experimental analysis on diverse concept learning tasks demonstrates both the effectiveness and efficiency of the proposed approach over a first-order concept learner using only examples.

LatticeNet: Fast Point Cloud Segmentation Using Permutohedral Lattices Radu Alexandru Rosu Peer Sch utt Jan Quenzel Sven Behnke Abstract -- Deep convolutional neural networks (CNNs) have shown outstanding performance in the task of semantically segmenting images. However, applying the same methods on 3D data still poses challenges due to the heavy memory requirements and the lack of structured data. Here, we propose LatticeNet, a novel approach for 3D semantic segmentation, which takes as input raw point clouds. A PointNet describes the local geometry which we embed into a sparse permutohedral lattice. The lattice allows for fast convolutions while keeping a low memory footprint. Further, we introduce DeformSlice, a novel learned data-dependent interpolation for projecting lattice features back onto the point cloud. We present results of 3D segmentation on various datasets where our method achieves state-of-the-art performance. I NTRODUCTION Environment understanding is a crucial ability for autonomous agents.

Layers are Python functions that take Tensors and configuration options as input and produce other tensors as output. Once the necessary Tensors have been composed, the user can convert the result into an Estimator via a model function.

Graph neural network (GNN) has shown superior performance in dealing with graphs, which has attracted considerable research attention recently. However, most of the existing GNN models are primarily designed for graphs in Euclidean spaces. Recent research has proven that the graph data exhibits non-Euclidean latent anatomy. Unfortunately, there was rarely study of GNN in non-Euclidean settings so far. To bridge this gap, in this paper, we study the GNN with attention mechanism in hyperbolic spaces at the first attempt. The research of hyperbolic GNN has some unique challenges: since the hyperbolic spaces are not vector spaces, the vector operations (e.g., vector addition, subtraction, and scalar multiplication) cannot be carried. To tackle this problem, we employ the gyrovector spaces, which provide an elegant algebraic formalism for hyperbolic geometry, to transform the features in a graph; and then we propose the hyperbolic proximity based attention mechanism to aggregate the features. Moreover, as mathematical operations in hyperbolic spaces could be more complicated than those in Euclidean spaces, we further devise a novel acceleration strategy using logarithmic and exponential mappings to improve the efficiency of our proposed model. The comprehensive experimental results on four real-world datasets demonstrate the performance of our proposed hyperbolic graph attention network model, by comparisons with other state-of-the-art baseline methods.

Machine Learning algorithms based on Brain-inspired Hyperdimensional (HD) computing imitate cognition by exploiting statistical properties of high-dimensional vector spaces. It is a promising solution for achieving high energy-efficiency in different machine learning tasks, such as classification, semi-supervised learning and clustering. A weakness of existing HD computing-based ML algorithms is the fact that they have to be binarized for achieving very high energy-efficiency. At the same time, binarized models reach lower classification accuracies. To solve the problem of the trade-off between energy-efficiency and classification accuracy, we propose the QubitHD algorithm. It stochastically binarizes HD-based algorithms, while maintaining comparable classification accuracies to their non-binarized counterparts. The FPGA implementation of QubitHD provides a 65% improvement in terms of energy-efficiency, and a 95% improvement in terms of the training time, as compared to state-of-the-art HD-based ML algorithms. It also outperforms state-of-the-art low-cost classifiers (like Binarized Neural Networks) in terms of speed and energy-efficiency by an order of magnitude during training and inference.

Assessing risk for voluminous legal documents such as request for proposal; contracts is tedious and error prone. We have developed "risk-o-meter", a framework, based on machine learning and natural language processing to review and assess risks of any legal document. Our framework uses Paragraph Vector, an unsupervised model to generate vector representation of text. This enables the framework to learn contextual relations of legal terms and generate sensible context aware embedding. The framework then feeds the vector space into a supervised classification algorithm to predict whether a paragraph belongs to a per-defined risk category or not. The framework thus extracts risk prone paragraphs. This technique efficiently overcomes the limitations of keyword-based search. We have achieved an accuracy of 91% for the risk category having the largest training dataset. This framework will help organizations optimize effort to identify risk from large document base with minimal human intervention and thus will help to have risk mitigated sustainable growth. Its machine learning capability makes it scalable to uncover relevant information from any type of document apart from legal documents, provided the library is per-populated and rich.

Generalized planning aims at computing an algorithm-like structure (generalized plan) that solves a set of multiple planning instances. In this paper we define negative examples for generalized planning as planning instances that must not be solved by a generalized plan. With this regard the paper extends the notion of validation of a generalized plan as the problem of verifying that a given generalized plan solves the set of input positives instances while it fails to solve a given input set of negative examples. This notion of plan validation allows us to define quantitative metrics to asses the generalization capacity of generalized plans. The paper also shows how to incorporate this new notion of plan validation into a compilation for plan synthesis that takes both positive and negative instances as input. Experiments show that incorporating negative examples can accelerate plan synthesis in several domains and leverage quantitative metrics to evaluate the generalization capacity of the synthesized plans.