We present a simple direct approach for solving the ICA problem, using density estimation and maximum likelihood. Given a candidate orthogonal frame, we model each of the coordinates using a semi-parametric density estimate based on cubic splines. Since our estimates have two continuous derivatives, we can easily run a second order search for the frame parameters. Our method performs very favorably when compared to state-of-the-art techniques. 1 Introduction Independent component analysis (ICA) is a popular enhancement over principal component analysis (PCA) and factor analysis. IRP which is assumed to arise from a linear mixing of a latent random source vector S E IRP, (1) X AS; the components Sj, j 1,...,p of S are assumed to be independently distributed.

We develop a maximum entropy (maxent) approach to generating recommendations in the context of a user's current navigation stream, suitable for environments where data is sparse, high-dimensional, and dynamic-- conditions typical of many recommendation applications. We address sparsity and dimensionality reduction by first clustering items based on user access patterns so as to attempt to minimize the apriori probability that recommendations will cross cluster boundaries and then recommending only within clusters. We address the inherent dynamic nature of the problem by explicitly modeling the data as a time series; we show how this representational expressivity fits naturally into a maxent framework. We conduct experiments on data from ResearchIndex, a popular online repository of over 470,000 computer science documents. We show that our maxent formulation outperforms several competing algorithms in offline tests simulating the recommendation of documents to ResearchIndex users.

Recently proposed algorithms for nonlinear dimensionality reduction fall broadly into two categories which have different advantages and disadvantages: global (Isomap [1]), and local (Locally Linear Embedding [2], Laplacian Eigenmaps [3]). We present two variants of Isomap which combine the advantages of the global approach with what have previously been exclusive advantages of local methods: computational sparsity and the ability to invert conformal maps.

We introduce a class of string kernels, called mismatch kernels, for use with support vector machines (SVMs) in a discriminative approach to the protein classification problem.

This paper presents two new formulations of multiple-instance learning as a maximum margin problem. The proposed extensions of the Support Vector Machine (SVM) learning approach lead to mixed integer quadratic programs that can be solved heuristically. Our generalization of SVMs makes a state-of-the-art classification technique, including nonlinear classification via kernels, available to an area that up to now has been largely dominated by special purpose methods. We present experimental results on a pharmaceutical data set and on applications in automated image indexing and document categorization.

Inner-product operators, often referred to as kernels in statistical learning, define a mapping from some input space into a feature space. The focus of this paper is the construction of biologically-motivated kernels for cortical activities. The kernels we derive, termed Spikernels, map spike count sequences into an abstract vector space in which we can perform various prediction tasks. We discuss in detail the derivation of Spikernels and describe an efficient algorithm for computing their value on any two sequences of neural population spike counts. We demonstrate the merits of our modeling approach using the Spikernel and various standard kernels for the task of predicting hand movement velocities from cortical recordings. In all of our experiments all the kernels we tested outperform the standard scalar product used in regression with the Spikernel consistently achieving the best performance.

We consider two ubiquitous processes: an industrial dryer and a level tank. For these applications, we compared three particle filtering variants: standard particle filtering, Rao-Blackwellised particle filtering and a version of Rao-Blackwellised particle filtering that does one-step look-ahead to select good sampling regions. We show that the overhead of the extra processing per particle of the more sophisticated methods is more than compensated by the decrease in error and variance.

The information bottleneck (IB) method is an information-theoretic formulation for clustering problems.

Pairwise data in empirical sciences typically violate metricity, either due to noise or due to fallible estimates, and therefore are hard to analyze by conventional machine learning technology. In this paper we therefore study ways to work around this problem. First, we present an alternative embedding to multidimensional scaling (MDS) that allows us to apply a variety of classical machine learning and signal processing algorithms. The class of pairwise grouping algorithms which share the shift-invariance property is statistically invariant under this embedding procedure, leading to identical assignments of objects to clusters. Based on this new vectorial representation, denoising methods are applied in a second step. Both steps provide a theoretically well controlled setup to translate from pairwise data to the respective denoised metric representation. We demonstrate the practical usefulness of our theoretical reasoning by discovering structure in protein sequence data bases, visibly improving performance upon existing automatic methods. 1 Introduction Unsupervised grouping or clustering aims at extracting hidden structure from data (see e.g.

We present an algorithm to extract features from high-dimensional gene expression profiles, based on the knowledge of a graph which links together genes known to participate to successive reactions in metabolic pathways. Motivated by the intuition that biologically relevant features are likely to exhibit smoothness with respect to the graph topology, the algorithm involves encoding the graph and the set of expression profiles into kernel functions, and performing a generalized form of canonical correlation analysis in the corresponding reproducible kernel Hilbert spaces. Function prediction experiments for the genes of the yeast S. Cerevisiae validate this approach by showing a consistent increase in performance when a state-of-the-art classifier uses the vector of features instead of the original expression profile to predict the functional class of a gene.