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 Statistical Learning


Coreset Markov Chain Monte Carlo

arXiv.org Machine Learning

A Bayesian coreset is a small, weighted subset of data that replaces the full dataset during inference in order to reduce computational cost. However, state of the art methods for tuning coreset weights are expensive, require nontrivial user input, and impose constraints on the model. In this work, we propose a new method -- Coreset MCMC -- that simulates a Markov chain targeting the coreset posterior, while simultaneously updating the coreset weights using those same draws. Coreset MCMC is simple to implement and tune, and can be used with any existing MCMC kernel. We analyze Coreset MCMC in a representative setting to obtain key insights about the convergence behaviour of the method. Empirical results demonstrate that Coreset MCMC provides higher quality posterior approximations and reduced computational cost compared with other coreset construction methods. Further, compared with other general subsampling MCMC methods, we find that Coreset MCMC has a higher sampling efficiency with competitively accurate posterior approximations.


On the Identifiability and Interpretability of Gaussian Process Models

arXiv.org Machine Learning

In this paper, we critically examine the prevalent practice of using additive mixtures of Mat\'ern kernels in single-output Gaussian process (GP) models and explore the properties of multiplicative mixtures of Mat\'ern kernels for multi-output GP models. For the single-output case, we derive a series of theoretical results showing that the smoothness of a mixture of Mat\'ern kernels is determined by the least smooth component and that a GP with such a kernel is effectively equivalent to the least smooth kernel component. Furthermore, we demonstrate that none of the mixing weights or parameters within individual kernel components are identifiable. We then turn our attention to multi-output GP models and analyze the identifiability of the covariance matrix $A$ in the multiplicative kernel $K(x,y) = AK_0(x,y)$, where $K_0$ is a standard single output kernel such as Mat\'ern. We show that $A$ is identifiable up to a multiplicative constant, suggesting that multiplicative mixtures are well suited for multi-output tasks. Our findings are supported by extensive simulations and real applications for both single- and multi-output settings. This work provides insight into kernel selection and interpretation for GP models, emphasizing the importance of choosing appropriate kernel structures for different tasks.


A Mean Field Approach to Empirical Bayes Estimation in High-dimensional Linear Regression

arXiv.org Machine Learning

We study empirical Bayes estimation in high-dimensional linear regression. To facilitate computationally efficient estimation of the underlying prior, we adopt a variational empirical Bayes approach, introduced originally in Carbonetto and Stephens (2012) and Kim et al. (2022). We establish asymptotic consistency of the nonparametric maximum likelihood estimator (NPMLE) and its (computable) naive mean field variational surrogate under mild assumptions on the design and the prior. Assuming, in addition, that the naive mean field approximation has a dominant optimizer, we develop a computationally efficient approximation to the oracle posterior distribution, and establish its accuracy under the 1-Wasserstein metric. This enables computationally feasible Bayesian inference; e.g., construction of posterior credible intervals with an average coverage guarantee, Bayes optimal estimation for the regression coefficients, estimation of the proportion of non-nulls, etc. Our analysis covers both deterministic and random designs, and accommodates correlations among the features. To the best of our knowledge, this provides the first rigorous nonparametric empirical Bayes method in a high-dimensional regression setting without sparsity.


Statistically Valid Variable Importance Assessment through Conditional Permutations

arXiv.org Machine Learning

Variable importance assessment has become a crucial step in machine-learning applications when using complex learners, such as deep neural networks, on large-scale data. Removal-based importance assessment is currently the reference approach, particularly when statistical guarantees are sought to justify variable inclusion. It is often implemented with variable permutation schemes. On the flip side, these approaches risk misidentifying unimportant variables as important in the presence of correlations among covariates. Here we develop a systematic approach for studying Conditional Permutation Importance (CPI) that is model agnostic and computationally lean, as well as reusable benchmarks of state-of-the-art variable importance estimators. We show theoretically and empirically that $\textit{CPI}$ overcomes the limitations of standard permutation importance by providing accurate type-I error control. When used with a deep neural network, $\textit{CPI}$ consistently showed top accuracy across benchmarks. An experiment on real-world data analysis in a large-scale medical dataset showed that $\textit{CPI}$ provides a more parsimonious selection of statistically significant variables. Our results suggest that $\textit{CPI}$ can be readily used as drop-in replacement for permutation-based methods.


A Batch-to-Online Transformation under Random-Order Model

arXiv.org Machine Learning

We introduce a transformation framework that can be utilized to develop online algorithms with low $\epsilon$-approximate regret in the random-order model from offline approximation algorithms. We first give a general reduction theorem that transforms an offline approximation algorithm with low average sensitivity to an online algorithm with low $\epsilon$-approximate regret. We then demonstrate that offline approximation algorithms can be transformed into a low-sensitivity version using a coreset construction method. To showcase the versatility of our approach, we apply it to various problems, including online $(k,z)$-clustering, online matrix approximation, and online regression, and successfully achieve polylogarithmic $\epsilon$-approximate regret for each problem. Moreover, we show that in all three cases, our algorithm also enjoys low inconsistency, which may be desired in some online applications.


Squared Neural Families: A New Class of Tractable Density Models

arXiv.org Machine Learning

Flexible models for probability distributions are an essential ingredient in many machine learning tasks. We develop and investigate a new class of probability distributions, which we call a Squared Neural Family (SNEFY), formed by squaring the 2-norm of a neural network and normalising it with respect to a base measure. Following the reasoning similar to the well established connections between infinitely wide neural networks and Gaussian processes, we show that SNEFYs admit closed form normalising constants in many cases of interest, thereby resulting in flexible yet fully tractable density models. SNEFYs strictly generalise classical exponential families, are closed under conditioning, and have tractable marginal distributions. Their utility is illustrated on a variety of density estimation, conditional density estimation, and density estimation with missing data tasks.


Distribution-Free Model-Agnostic Regression Calibration via Nonparametric Methods

arXiv.org Machine Learning

In this paper, we consider the uncertainty quantification problem for regression models. Specifically, we consider an individual calibration objective for characterizing the quantiles of the prediction model. While such an objective is well-motivated from downstream tasks such as newsvendor cost, the existing methods have been largely heuristic and lack of statistical guarantee in terms of individual calibration. We show via simple examples that the existing methods focusing on population-level calibration guarantees such as average calibration or sharpness can lead to harmful and unexpected results. We propose simple nonparametric calibration methods that are agnostic of the underlying prediction model and enjoy both computational efficiency and statistical consistency. Our approach enables a better understanding of the possibility of individual calibration, and we establish matching upper and lower bounds for the calibration error of our proposed methods. Technically, our analysis combines the nonparametric analysis with a covering number argument for parametric analysis, which advances the existing theoretical analyses in the literature of nonparametric density estimation and quantile bandit problems. Importantly, the nonparametric perspective sheds new theoretical insights into regression calibration in terms of the curse of dimensionality and reconciles the existing results on the impossibility of individual calibration. To our knowledge, we make the first effort to reach both individual calibration and finite-sample guarantee with minimal assumptions in terms of conformal prediction. Numerical experiments show the advantage of such a simple approach under various metrics, and also under covariates shift. We hope our work provides a simple benchmark and a starting point of theoretical ground for future research on regression calibration.


Hierarchical clustering with OWA-based linkages, the Lance-Williams formula, and dendrogram inversions

arXiv.org Machine Learning

Agglomerative hierarchical clustering based on Ordered Weighted Averaging (OWA) operators not only generalises the single, complete, and average linkages, but also includes intercluster distances based on a few nearest or farthest neighbours, trimmed and winsorised means of pairwise point similarities, amongst many others. We explore the relationships between the famous Lance-Williams update formula and the extended OWA-based linkages with weights generated via infinite coefficient sequences. Furthermore, we provide some conditions for the weight generators to guarantee the resulting dendrograms to be free from unaesthetic inversions.


Unconstrained Dynamic Regret via Sparse Coding

arXiv.org Machine Learning

Motivated by the challenge of nonstationarity in sequential decision making, we study Online Convex Optimization (OCO) under the coupling of two problem structures: the domain is unbounded, and the comparator sequence $u_1,\ldots,u_T$ is arbitrarily time-varying. As no algorithm can guarantee low regret simultaneously against all comparator sequences, handling this setting requires moving from minimax optimality to comparator adaptivity. That is, sensible regret bounds should depend on certain complexity measures of the comparator relative to one's prior knowledge. This paper achieves a new type of these adaptive regret bounds via a sparse coding framework. The complexity of the comparator is measured by its energy and its sparsity on a user-specified dictionary, which offers considerable versatility. Equipped with a wavelet dictionary for example, our framework improves the state-of-the-art bound (Jacobsen & Cutkosky, 2022) by adapting to both ($i$) the magnitude of the comparator average $||\bar u||=||\sum_{t=1}^Tu_t/T||$, rather than the maximum $\max_t||u_t||$; and ($ii$) the comparator variability $\sum_{t=1}^T||u_t-\bar u||$, rather than the uncentered sum $\sum_{t=1}^T||u_t||$. Furthermore, our analysis is simpler due to decoupling function approximation from regret minimization.


Cause-Effect Inference in Location-Scale Noise Models: Maximum Likelihood vs. Independence Testing

arXiv.org Machine Learning

A fundamental problem of causal discovery is cause-effect inference, learning the correct causal direction between two random variables. Significant progress has been made through modelling the effect as a function of its cause and a noise term, which allows us to leverage assumptions about the generating function class. The recently introduced heteroscedastic location-scale noise functional models (LSNMs) combine expressive power with identifiability guarantees. LSNM model selection based on maximizing likelihood achieves state-of-the-art accuracy, when the noise distributions are correctly specified. However, through an extensive empirical evaluation, we demonstrate that the accuracy deteriorates sharply when the form of the noise distribution is misspecified by the user. Our analysis shows that the failure occurs mainly when the conditional variance in the anti-causal direction is smaller than that in the causal direction. As an alternative, we find that causal model selection through residual independence testing is much more robust to noise misspecification and misleading conditional variance.