Fitness functions map large combinatorial spaces of biological sequences to properties of interest. Inferring these multimodal functions from experimental data is a central task in modern protein engineering. Global epistasis models are an effective and physically-grounded class of models for estimating fitness functions from observed data. These models assume that a sparse latent function is transformed by a monotonic nonlinearity to emit measurable fitness. Here we demonstrate that minimizing contrastive loss functions, such as the Bradley-Terry loss, is a simple and flexible technique for extracting the sparse latent function implied by global epistasis. We argue by way of a fitness-epistasis uncertainty principle that the nonlinearities in global epistasis models can produce observed fitness functions that do not admit sparse representations, and thus may be inefficient to learn from observations when using a Mean Squared Error (MSE) loss (a common practice). We show that contrastive losses are able to accurately estimate a ranking function from limited data even in regimes where MSE is ineffective. We validate the practical utility of this insight by showing contrastive loss functions result in consistently improved performance on benchmark tasks.

The Shapley value is widely regarded as a trustworthy attribution metric. However, when people use Shapley values to explain the attribution of input variables of a deep neural network (DNN), it usually requires a very high computational cost to approximate relatively accurate Shapley values in real-world applications. Therefore, we propose a novel network architecture, the HarsanyiNet, which makes inferences on the input sample and simultaneously computes the exact Shapley values of the input variables in a single forward propagation. The HarsanyiNet is designed on the theoretical foundation that the Shapley value can be reformulated as the redistribution of Harsanyi interactions encoded by the network.

Machine learning from explanations (MLX) is an approach to learning that uses human-provided explanations of relevant or irrelevant features for each input to ensure that model predictions are right for the right reasons. Existing MLX approaches rely on local model interpretation methods and require strong model smoothing to align model and human explanations, leading to sub-optimal performance. We recast MLX as a robustness problem, where human explanations specify a lower dimensional manifold from which perturbations can be drawn, and show both theoretically and empirically how this approach alleviates the need for strong model smoothing. We consider various approaches to achieving robustness, leading to improved performance over prior MLX methods. Finally, we show how to combine robustness with an earlier MLX method, yielding state-of-the-art results on both synthetic and real-world benchmarks.

Designing machine learning algorithms that are accurate yet fair, not discriminating based on any sensitive attribute, is of paramount importance for society to accept AI for critical applications. In this article, we propose a novel fair representation learning method termed the R\'enyi Fair Information Bottleneck Method (RFIB) which incorporates constraints for utility, fairness, and compactness (compression) of representation, and apply it to image and tabular data classification. A key attribute of our approach is that we consider - in contrast to most prior work - both demographic parity and equalized odds as fairness constraints, allowing for a more nuanced satisfaction of both criteria. Leveraging a variational approach, we show that our objectives yield a loss function involving classical Information Bottleneck (IB) measures and establish an upper bound in terms of two R\'enyi measures of order $\alpha$ on the mutual information IB term measuring compactness between the input and its encoded embedding. We study the influence of the $\alpha$ parameter as well as two other tunable IB parameters on achieving utility/fairness trade-off goals, and show that the $\alpha$ parameter gives an additional degree of freedom that can be used to control the compactness of the representation. Experimenting on three different image datasets (EyePACS, CelebA, and FairFace) and two tabular datasets (Adult and COMPAS), using both binary and categorical sensitive attributes, we show that on various utility, fairness, and compound utility/fairness metrics RFIB outperforms current state-of-the-art approaches.

Meta-learning is a powerful approach that exploits historical data to quickly solve new tasks from the same distribution. In the low-data regime, methods based on the closed-form posterior of Gaussian processes (GP) together with Bayesian optimization have achieved high performance. However, these methods are either computationally expensive or introduce assumptions that hinder a principled propagation of uncertainty between task models. This may disrupt the balance between exploration and exploitation during optimization. In this paper, we develop ScaML-GP, a modular GP model for meta-learning that is scalable in the number of tasks. Our core contribution is a carefully designed multi-task kernel that enables hierarchical training and task scalability. Conditioning ScaML-GP on the meta-data exposes its modular nature yielding a test-task prior that combines the posteriors of meta-task GPs. In synthetic and real-world meta-learning experiments, we demonstrate that ScaML-GP can learn efficiently both with few and many meta-tasks.

We present an efficient parameter-free approach for statistical learning from corrupted training sets. We identify corrupted and non-corrupted samples using latent Bernoulli variables, and therefore formulate the robust learning problem as maximization of the likelihood where latent variables are marginalized out. The resulting optimization problem is solved via variational inference using an efficient Expectation-Maximization based method. The proposed approach improves over the state-of-the-art by automatically inferring the corruption level and identifying outliers, while adding minimal computational overhead. We demonstrate our robust learning method on a wide variety of machine learning tasks including online learning and deep learning where it exhibits ability to adapt to different levels of noise and attain high prediction accuracy.

Understanding the generalization abilities of modern machine learning algorithms has been a major research topic over the past decades. In recent years, the learning dynamics of Stochastic Gradient Descent (SGD) have been related to heavy-tailed dynamics. This has been successfully applied to generalization theory by exploiting the fractal properties of those dynamics. However, the derived bounds depend on mutual information (decoupling) terms that are beyond the reach of computability. In this work, we prove generalization bounds over the trajectory of a class of heavy-tailed dynamics, without those mutual information terms. Instead, we introduce a geometric decoupling term by comparing the learning dynamics (depending on the empirical risk) with an expected one (depending on the population risk). We further upper-bound this geometric term, by using techniques from the heavy-tailed and the fractal literature, making it fully computable. Moreover, as an attempt to tighten the bounds, we propose a PAC-Bayesian setting based on perturbed dynamics, in which the same geometric term plays a crucial role and can still be bounded using the techniques described above.

Contrastive learning is a highly successful technique for learning representations of data from labeled tuples, specifying the distance relations within the tuple. We study the sample complexity of contrastive learning, i.e. the minimum number of labeled tuples sufficient for getting high generalization accuracy. We give tight bounds on the sample complexity in a variety of settings, focusing on arbitrary distance functions, both general $\ell_p$-distances, and tree metrics. Our main result is an (almost) optimal bound on the sample complexity of learning $\ell_p$-distances for integer $p$. For any $p \ge 1$ we show that $\tilde \Theta(\min(nd,n^2))$ labeled tuples are necessary and sufficient for learning $d$-dimensional representations of $n$-point datasets. Our results hold for an arbitrary distribution of the input samples and are based on giving the corresponding bounds on the Vapnik-Chervonenkis/Natarajan dimension of the associated problems. We further show that the theoretical bounds on sample complexity obtained via VC/Natarajan dimension can have strong predictive power for experimental results, in contrast with the folklore belief about a substantial gap between the statistical learning theory and the practice of deep learning.

Regularization in modern machine learning is crucial, and it can take various forms in algorithmic design: training set, model family, error function, regularization terms, and optimizations. In particular, the learning rate, which can be interpreted as a temperature-like parameter within the statistical mechanics of learning, plays a crucial role in neural network training. Indeed, many widely adopted training strategies basically just define the decay of the learning rate over time. This process can be interpreted as decreasing a temperature, using either a global learning rate (for the entire model) or a learning rate that varies for each parameter. This paper proposes TempBalance, a straightforward yet effective layer-wise learning rate method. TempBalance is based on Heavy-Tailed Self-Regularization (HT-SR) Theory, an approach which characterizes the implicit self-regularization of different layers in trained models. We demonstrate the efficacy of using HT-SR-motivated metrics to guide the scheduling and balancing of temperature across all network layers during model training, resulting in improved performance during testing. We implement TempBalance on CIFAR10, CIFAR100, SVHN, and TinyImageNet datasets using ResNets, VGGs, and WideResNets with various depths and widths. Our results show that TempBalance significantly outperforms ordinary SGD and carefully-tuned spectral norm regularization. We also show that TempBalance outperforms a number of state-of-the-art optimizers and learning rate schedulers.

We develop an NLP-based procedure for detecting systematic nonmeritorious consumer complaints, simply called systematic anomalies, among complaint narratives. While classification algorithms are used to detect pronounced anomalies, in the case of smaller and frequent systematic anomalies, the algorithms may falter due to a variety of reasons, including technical ones as well as natural limitations of human analysts. Therefore, as the next step after classification, we convert the complaint narratives into quantitative data, which are then analyzed using an algorithm for detecting systematic anomalies. We illustrate the entire procedure using complaint narratives from the Consumer Complaint Database of the Consumer Financial Protection Bureau.