Existing knowledge hypergraph embedding methods mainly focused on improving model performance, but their model structures are becoming more complex and redundant. Furthermore, due to the inherent complex semantic knowledge, the computation of knowledge hypergraph embedding models is often very expensive, leading to low efficiency. In this paper, we propose a feature interaction and extraction-enhanced 3D circular convolutional embedding model, HyCubE, which designs a novel 3D circular convolutional neural network and introduces the alternate mask stack strategy to achieve efficient n-ary knowledge hypergraph embedding. By adaptively adjusting the 3D circular convolution kernel size and uniformly embedding the entity position information, HyCubE improves the model performance with fewer parameters and reaches a better trade-off between model performance and efficiency. In addition, we use 1-N multilinear scoring based on the entity mask mechanism to further accelerate the model training efficiency. Finally, extensive experimental results on all datasets demonstrate that HyCubE consistently outperforms state-of-the-art baselines, with an average improvement of 4.08%-10.77% and a maximum improvement of 21.16% across all metrics. Commendably, HyCubE speeds up by an average of 7.55x and reduces memory usage by an average of 77.02% compared to the latest state-of-the-art baselines.

In this work, we study the mean-field flow for learning subspace-sparse polynomials using stochastic gradient descent and two-layer neural networks, where the input distribution is standard Gaussian and the output only depends on the projection of the input onto a low-dimensional subspace. We propose a basis-free generalization of the merged-staircase property in Abbe et al. (2022) and establish a necessary condition for the SGD-learnability. In addition, we prove that the condition is almost sufficient, in the sense that a condition slightly stronger than the necessary condition can guarantee the exponential decay of the loss functional to zero.

Effective DNA embedding remains crucial in genomic analysis, particularly in scenarios lacking labeled data for model fine-tuning, despite the significant advancements in genome foundation models. A prime example is metagenomics binning, a critical process in microbiome research that aims to group DNA sequences by their species from a complex mixture of DNA sequences derived from potentially thousands of distinct, often uncharacterized species. To fill the lack of effective DNA embedding models, we introduce DNABERT-S, a genome foundation model that specializes in creating species-aware DNA embeddings. To encourage effective embeddings to error-prone long-read DNA sequences, we introduce Manifold Instance Mixup (MI-Mix), a contrastive objective that mixes the hidden representations of DNA sequences at randomly selected layers and trains the model to recognize and differentiate these mixed proportions at the output layer. We further enhance it with the proposed Curriculum Contrastive Learning (C$^2$LR) strategy. Empirical results on 18 diverse datasets showed DNABERT-S's remarkable performance. It outperforms the top baseline's performance in 10-shot species classification with just a 2-shot training while doubling the Adjusted Rand Index (ARI) in species clustering and substantially increasing the number of correctly identified species in metagenomics binning. The code, data, and pre-trained model are publicly available at https://github.com/Zhihan1996/DNABERT_S.

National Statistical Organizations (NSOs) increasingly draw on Machine Learning (ML) to improve the timeliness and cost-effectiveness of their products. When introducing ML solutions, NSOs must ensure that high standards with respect to robustness, reproducibility, and accuracy are upheld as codified, e.g., in the Quality Framework for Statistical Algorithms (QF4SA; Yung et al. 2022). At the same time, a growing body of research focuses on fairness as a pre-condition of a safe deployment of ML to prevent disparate social impacts in practice. However, fairness has not yet been explicitly discussed as a quality aspect in the context of the application of ML at NSOs. We employ Yung et al. (2022)'s QF4SA quality framework and present a mapping of its quality dimensions to algorithmic fairness. We thereby extend the QF4SA framework in several ways: we argue for fairness as its own quality dimension, we investigate the interaction of fairness with other dimensions, and we explicitly address data, both on its own and its interaction with applied methodology. In parallel with empirical illustrations, we show how our mapping can contribute to methodology in the domains of official statistics, algorithmic fairness, and trustworthy machine learning.

A key goal of modern machine learning is to learn representations of complex data that are humaninterpretable and can be controlled. This goal is of paramount importance given the breadth and importance of ML in today's world. There seem to be two broad approaches toward such intelligent systems. The first approach is to build models that are inherently interpretable and then subsequently focus on how to extract maximum performance from them; and the second approach is to build highperformance neural models, and then subsequently invest efforts to understand the inner workings of such models. A prominent example of the first camp is the field of Causal Representation Learning (CRL) [82, 81].

This work develops a Bayesian non-parametric approach to signal separation where the signals may vary according to latent variables. Our key contribution is to augment Gaussian Process Latent Variable Models (GPLVMs) to incorporate the case where each data point comprises the weighted sum of a known number of pure component signals, observed across several input locations. Our framework allows the use of a range of priors for the weights of each observation. This flexibility enables us to represent use cases including sum-to-one constraints for estimating fractional makeup, and binary weights for classification. Our contributions are particularly relevant to spectroscopy, where changing conditions may cause the underlying pure component signals to vary from sample to sample. To demonstrate the applicability to both spectroscopy and other domains, we consider several applications: a near-infrared spectroscopy data set with varying temperatures, a simulated data set for identifying flow configuration through a pipe, and a data set for determining the type of rock from its reflectance.

Platform businesses operate on a digital core and their decision making requires high-dimensional accurate forecast streams at different levels of cross-sectional (e.g., geographical regions) and temporal aggregation (e.g., minutes to days). It also necessitates coherent forecasts across all levels of the hierarchy to ensure aligned decision making across different planning units such as pricing, product, controlling and strategy. Given that platform data streams feature complex characteristics and interdependencies, we introduce a non-linear hierarchical forecast reconciliation method that produces cross-temporal reconciled forecasts in a direct and automated way through the use of popular machine learning methods. The method is sufficiently fast to allow forecast-based high-frequency decision making that platforms require. We empirically test our framework on a unique, large-scale streaming dataset from a leading on-demand delivery platform in Europe.

This paper proposes a stochastic proximal point method to solve a stochastic convex composite optimization problem. High probability results in stochastic optimization typically hinge on restrictive assumptions on the stochastic gradient noise, for example, sub-Gaussian distributions. Assuming only weak conditions such as bounded variance of the stochastic gradient, this paper establishes a low sample complexity to obtain a high probability guarantee on the convergence of the proposed method. Additionally, a notable aspect of this work is the development of a subroutine to solve the proximal subproblem, which also serves as a novel technique for variance reduction.

Despite a large and significant body of recent work focused on estimating the out-of-sample risk of regularized models in the high dimensional regime, a theoretical understanding of this problem for non-differentiable penalties such as generalized LASSO and nuclear norm is missing. In this paper we resolve this challenge. We study this problem in the proportional high dimensional regime where both the sample size n and number of features p are large, and n/p and the signal-to-noise ratio (per observation) remain finite. We provide finite sample upper bounds on the expected squared error of leave-one-out cross-validation (LO) in estimating the out-of-sample risk. The theoretical framework presented here provides a solid foundation for elucidating empirical findings that show the accuracy of LO.

This manuscript presents a comprehensive review of the use of Artificial Intelligence (AI) in Systematic Literature Reviews (SLRs). A SLR is a rigorous and organised methodology that assesses and integrates previous research on a given topic. Numerous tools have been developed to assist and partially automate the SLR process. The increasing role of AI in this field shows great potential in providing more effective support for researchers, moving towards the semi-automatic creation of literature reviews. Our study focuses on how AI techniques are applied in the semi-automation of SLRs, specifically in the screening and extraction phases. We examine 21 leading SLR tools using a framework that combines 23 traditional features with 11 AI features. We also analyse 11 recent tools that leverage large language models for searching the literature and assisting academic writing. Finally, the paper discusses current trends in the field, outlines key research challenges, and suggests directions for future research.