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 Statistical Learning


PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion

arXiv.org Artificial Intelligence

Peptide therapeutics, a major class of medicines, have achieved remarkable success across diseases such as diabetes and cancer, with landmark examples such as GLP-1 receptor agonists revolutionizing the treatment of type-2 diabetes and obesity. Despite their success, designing peptides that satisfy multiple conflicting objectives, such as target binding affinity, solubility, and membrane permeability, remains a major challenge. Classical drug development and structure-based design are ineffective for such tasks, as they fail to optimize global functional properties critical for therapeutic efficacy. Existing generative frameworks are largely limited to continuous spaces, unconditioned outputs, or single-objective guidance, making them unsuitable for discrete sequence optimization across multiple properties. To address this, we present PepTune, a multi-objective discrete diffusion model for the simultaneous generation and optimization of therapeutic peptide SMILES. Built on the Masked Discrete Language Model (MDLM) framework, PepTune ensures valid peptide structures with state-dependent masking schedules and penalty-based objectives. To guide the diffusion process, we propose a Monte Carlo Tree Search (MCTS)-based strategy that balances exploration and exploitation to iteratively refine Pareto-optimal sequences. MCTS integrates classifier-based rewards with search-tree expansion, overcoming gradient estimation challenges and data sparsity inherent to discrete spaces. Using PepTune, we generate diverse, chemically-modified peptides optimized for multiple therapeutic properties, including target binding affinity, membrane permeability, solubility, hemolysis, and non-fouling characteristics on various disease-relevant targets. In total, our results demonstrate that MCTS-guided discrete diffusion is a powerful and modular approach for multi-objective sequence design in discrete state spaces.


Distilled Lifelong Self-Adaptation for Configurable Systems

arXiv.org Artificial Intelligence

Modern configurable systems provide tremendous opportunities for engineering future intelligent software systems. A key difficulty thereof is how to effectively self-adapt the configuration of a running system such that its performance (e.g., runtime and throughput) can be optimized under time-varying workloads. This unfortunately remains unaddressed in existing approaches as they either overlook the available past knowledge or rely on static exploitation of past knowledge without reasoning the usefulness of information when planning for self-adaptation. In this paper, we tackle this challenging problem by proposing DLiSA, a framework that self-adapts configurable systems. DLiSA comes with two properties: firstly, it supports lifelong planning, and thereby the planning process runs continuously throughout the lifetime of the system, allowing dynamic exploitation of the accumulated knowledge for rapid adaptation. Secondly, the planning for a newly emerged workload is boosted via distilled knowledge seeding, in which the knowledge is dynamically purified such that only useful past configurations are seeded when necessary, mitigating misleading information. Extensive experiments suggest that the proposed DLiSA significantly outperforms state-of-the-art approaches, demonstrating a performance improvement of up to 229% and a resource acceleration of up to 2.22x on generating promising adaptation configurations. All data and sources can be found at our repository: https://github.com/ideas-labo/dlisa.


Efficient Unsupervised Shortcut Learning Detection and Mitigation in Transformers

arXiv.org Artificial Intelligence

Shortcut learning, i.e., a model's reliance on undesired features not directly relevant to the task, is a major challenge that severely limits the applications of machine learning algorithms, particularly when deploying them to assist in making sensitive decisions, such as in medical diagnostics. In this work, we leverage recent advancements in machine learning to create an unsupervised framework that is capable of both detecting and mitigating shortcut learning in transformers. We validate our method on multiple datasets. Results demonstrate that our framework significantly improves both worst-group accuracy (samples misclassified due to shortcuts) and average accuracy, while minimizing human annotation effort. Moreover, we demonstrate that the detected shortcuts are meaningful and informative to human experts, and that our framework is computationally efficient, allowing it to be run on consumer hardware.


VERITAS: Verifying the Performance of AI-native Transceiver Actions in Base-Stations

arXiv.org Artificial Intelligence

Artificial Intelligence (AI)-native receivers prove significant performance improvement in high noise regimes and can potentially reduce communication overhead compared to the traditional receiver. However, their performance highly depends on the representativeness of the training dataset. A major issue is the uncertainty of whether the training dataset covers all test environments and waveform configurations, and thus, whether the trained model is robust in practical deployment conditions. To this end, we propose a joint measurement-recovery framework for AI-native transceivers post deployment, called VERITAS, that continuously looks for distribution shifts in the received signals and triggers finite re-training spurts. VERITAS monitors the wireless channel using 5G pilots fed to an auxiliary neural network that detects out-of-distribution channel profile, transmitter speed, and delay spread. As soon as such a change is detected, a traditional (reference) receiver is activated, which runs for a period of time in parallel to the AI-native receiver. Finally, VERTIAS compares the bit probabilities of the AI-native and the reference receivers for the same received data inputs, and decides whether or not a retraining process needs to be initiated. Our evaluations reveal that VERITAS can detect changes in the channel profile, transmitter speed, and delay spread with 99%, 97%, and 69% accuracies, respectively, followed by timely initiation of retraining for 86%, 93.3%, and 94.8% of inputs in channel profile, transmitter speed, and delay spread test sets, respectively.


Embedding Style Beyond Topics: Analyzing Dispersion Effects Across Different Language Models

arXiv.org Artificial Intelligence

To enrich this material, have shown advanced natural language processing we employed text generation techniques. We created capabilities across diverse tasks, making their a corpus where Queneau's style aligns with explainability an important area of research (Zhao Fénéon's unique style, and another corpus where et al., 2024). A key aspect of these models is their Fénéon's style varies in line with Queneau's plurality ability to generate meaningful text representations of styles. This design aimed to effectively through vector embeddings, that encode semantic assess the impact of topic and style on embedding information.


Regression Guided Strategy to Automated Facial Beauty Optimization through Image Synthesis

arXiv.org Artificial Intelligence

The use of beauty filters on social media, which enhance the appearance of individuals in images, is a well-researched area, with existing methods proving to be highly effective. Traditionally, such enhancements are performed using rule-based approaches that leverage domain knowledge of facial features associated with attractiveness, applying very specific transformations to maximize these attributes. In this work, we present an alternative approach that projects facial images as points on the latent space of a pre-trained GAN, which are then optimized to produce beautiful faces. The movement of the latent points is guided by a newly developed facial beauty evaluation regression network, which learns to distinguish attractive facial features, outperforming many existing facial beauty evaluation models in this domain. By using this data-driven approach, our method can automatically capture holistic patterns in beauty directly from data rather than relying on predefined rules, enabling more dynamic and potentially broader applications of facial beauty editing. This work demonstrates a potential new direction for automated aesthetic enhancement, offering a complementary alternative to existing methods.


REM: A Scalable Reinforced Multi-Expert Framework for Multiplex Influence Maximization

arXiv.org Artificial Intelligence

In social online platforms, identifying influential seed users to maximize influence spread is a crucial as it can greatly diminish the cost and efforts required for information dissemination. While effective, traditional methods for Multiplex Influence Maximization (MIM) have reached their performance limits, prompting the emergence of learning-based approaches. These novel methods aim for better generalization and scalability for more sizable graphs but face significant challenges, such as (1) inability to handle unknown diffusion patterns and (2) reliance on high-quality training samples. To address these issues, we propose the Reinforced Expert Maximization framework (REM). REM leverages a Propagation Mixture of Experts technique to encode dynamic propagation of large multiplex networks effectively in order to generate enhanced influence propagation. Noticeably, REM treats a generative model as a policy to autonomously generate different seed sets and learn how to improve them from a Reinforcement Learning perspective. Extensive experiments on several real-world datasets demonstrate that REM surpasses state-of-the-art methods in terms of influence spread, scalability, and inference time in influence maximization tasks.


Enhancing Unsupervised Feature Selection via Double Sparsity Constrained Optimization

arXiv.org Artificial Intelligence

Unsupervised feature selection (UFS) is widely applied in machine learning and pattern recognition. However, most of the existing methods only consider a single sparsity, which makes it difficult to select valuable and discriminative feature subsets from the original high-dimensional feature set. In this paper, we propose a new UFS method called DSCOFS via embedding double sparsity constrained optimization into the classical principal component analysis (PCA) framework. Double sparsity refers to using $\ell_{2,0}$-norm and $\ell_0$-norm to simultaneously constrain variables, by adding the sparsity of different types, to achieve the purpose of improving the accuracy of identifying differential features. The core is that $\ell_{2,0}$-norm can remove irrelevant and redundant features, while $\ell_0$-norm can filter out irregular noisy features, thereby complementing $\ell_{2,0}$-norm to improve discrimination. An effective proximal alternating minimization method is proposed to solve the resulting nonconvex nonsmooth model. Theoretically, we rigorously prove that the sequence generated by our method globally converges to a stationary point. Numerical experiments on three synthetic datasets and eight real-world datasets demonstrate the effectiveness, stability, and convergence of the proposed method. In particular, the average clustering accuracy (ACC) and normalized mutual information (NMI) are improved by at least 3.34% and 3.02%, respectively, compared with the state-of-the-art methods. More importantly, two common statistical tests and a new feature similarity metric verify the advantages of double sparsity. All results suggest that our proposed DSCOFS provides a new perspective for feature selection.


How to explain grokking

arXiv.org Artificial Intelligence

Simple ideas of thermodynamics and kinetic theory allow us to explain better generalization observed for learning by the stochastic gradient optimization procedure, see also [7] (where also overfitting control for GAN model was discussed). We also have explained the grokking(delayed generalization) phenomenon and some properties of grokking observed in [8].


Quantifying Positional Biases in Text Embedding Models

arXiv.org Artificial Intelligence

Embedding models are crucial for tasks in Information Retrieval (IR) and semantic similarity measurement, yet their handling of longer texts and associated positional biases remains underexplored. In this study, we investigate the impact of content position and input size on text embeddings. Our experiments reveal that embedding models, irrespective of their positional encoding mechanisms, disproportionately prioritize the beginning of an input. Ablation studies demonstrate that insertion of irrelevant text or removal at the start of a document reduces cosine similarity between altered and original embeddings by up to 12.3% more than ablations at the end. Regression analysis further confirms this bias, with sentence importance declining as position moves further from the start, even with with content-agnosticity. We hypothesize that this effect arises from pre-processing strategies and chosen positional encoding techniques. These findings quantify the sensitivity of retrieval systems and suggest a new lens towards embedding model robustness.