Efficient and scalable non-parametric or semi-parametric regression analysis and density estimation are of crucial importance to the fields of statistics and machine learning. However, available methods are limited in their ability to handle large-scale data. We address this issue by developing a novel coreset construction for multivariate conditional transformation models (MCTMs) to enhance their scalability and training efficiency. To the best of our knowledge, these are the first coresets for semi-parametric distributional models. Our approach yields substantial data reduction via importance sampling. It ensures with high probability that the log-likelihood remains within multiplicative error bounds of $(1\pm\varepsilon)$ and thereby maintains statistical model accuracy. Compared to conventional full-parametric models, where coresets have been incorporated before, our semi-parametric approach exhibits enhanced adaptability, particularly in scenarios where complex distributions and non-linear relationships are present, but not fully understood. To address numerical problems associated with normalizing logarithmic terms, we follow a geometric approximation based on the convex hull of input data. This ensures feasible, stable, and accurate inference in scenarios involving large amounts of data. Numerical experiments demonstrate substantially improved computational efficiency when handling large and complex datasets, thus laying the foundation for a broad range of applications within the statistics and machine learning communities.

Prior work on partial labels learning (PLL) has shown that learning is possible even when each instance is associated with a bag of labels, rather than a single accurate but costly label. However, the necessary conditions for learning with partial labels remain unclear, and existing PLL methods are effective only in specific scenarios. In this work, we mathematically characterize the settings in which PLL is feasible. In addition, we present PL A-$k$NN, an adaptive nearest-neighbors algorithm for PLL that is effective in general scenarios and enjoys strong performance guarantees. Experimental results corroborate that PL A-$k$NN can outperform state-of-the-art methods in general PLL scenarios.

Several graph data mining, signal processing, and machine learning downstream tasks rely on information related to the eigenvectors of the associated adjacency or Laplacian matrix. Classical eigendecomposition methods are powerful when the matrix remains static but cannot be applied to problems where the matrix entries are updated or the number of rows and columns increases frequently. Such scenarios occur routinely in graph analytics when the graph is changing dynamically and either edges and/or nodes are being added and removed. This paper puts forth a new algorithmic framework to update the eigenvectors associated with the leading eigenvalues of an initial adjacency or Laplacian matrix as the graph evolves dynamically. The proposed algorithm is based on Rayleigh-Ritz projections, in which the original eigenvalue problem is projected onto a restricted subspace which ideally encapsulates the invariant subspace associated with the sought eigenvectors. Following ideas from eigenvector perturbation analysis, we present a new methodology to build the projection subspace. The proposed framework features lower computational and memory complexity with respect to competitive alternatives while empirical results show strong qualitative performance, both in terms of eigenvector approximation and accuracy of downstream learning tasks of central node identification and node clustering.

Boundary condition tuning is a fundamental step in patient-specific cardiovascular modeling. Despite an increase in offline training cost, recent methods in data-driven variational inference can efficiently estimate the joint posterior distribution of boundary conditions, with amortization of training efforts over clinical targets. However, even the most modern approaches fall short in two important scenarios: open-loop models with known mean flow and assumed waveform shapes, and anatomies affected by vascular lesions where segmentation influences the reachability of pressure or flow split targets. In both cases, boundary conditions cannot be tuned in isolation. We introduce a general amortized inference framework based on probabilistic flow that treats clinical targets, inflow features, and point cloud embeddings of patient-specific anatomies as either conditioning variables or quantities to be jointly estimated. We demonstrate the approach on two patient-specific models: an aorto-iliac bifurcation with varying stenosis locations and severity, and a coronary arterial tree.

Recent research has shown that Transformers with linear attention are capable of in-context learning (ICL) by implementing a linear estimator through gradient descent steps. However, the existing results on the optimization landscape apply under stylized settings where task and feature vectors are assumed to be IID and the attention weights are fully parameterized. In this work, we develop a stronger characterization of the optimization and generalization landscape of ICL through contributions on architectures, low-rank parameterization, and correlated designs: (1) We study the landscape of 1-layer linear attention and 1-layer H3, a state-space model. Under a suitable correlated design assumption, we prove that both implement 1-step preconditioned gradient descent. We show that thanks to its native convolution filters, H3 also has the advantage of implementing sample weighting and outperforming linear attention in suitable settings.

Transformers have demonstrated great power in the recent development of large foundational models. In particular, the Vision Transformer (ViT) has brought revolutionary changes to the field of vision, achieving significant accomplishments on the experimental side. However, their theoretical capabilities, particularly in terms of generalization when trained to overfit training data, are still not fully understood. To address this gap, this work delves deeply into the \textit{benign overfitting} perspective of transformers in vision. To this end, we study the optimization of a Transformer composed of a self-attention layer with softmax followed by a fully connected layer under gradient descent on a certain data distribution model. By developing techniques that address the challenges posed by softmax and the interdependent nature of multiple weights in transformer optimization, we successfully characterized the training dynamics and achieved generalization in post-training. Our results establish a sharp condition that can distinguish between the small test error phase and the large test error regime, based on the signal-to-noise ratio in the data model. The theoretical results are further verified by experimental simulation. To the best of our knowledge, this is the first work to characterize benign overfitting for Transformers.

Out-of-Distribution (OoD) detection is vital for the reliability of Deep Neural Networks (DNNs).Existing works have shown the insufficiency of Principal Component Analysis (PCA) straightforwardly applied on the features of DNNs in detecting OoD data from In-Distribution (InD) data.The failure of PCA suggests that the network features residing in OoD and InD are not well separated by simply proceeding in a linear subspace, which instead can be resolved through proper non-linear mappings.In this work, we leverage the framework of Kernel PCA (KPCA) for OoD detection, and seek suitable non-linear kernels that advocate the separability between InD and OoD data in the subspace spanned by the principal components.Besides, explicit feature mappings induced from the devoted task-specific kernels are adopted so that the KPCA reconstruction error for new test samples can be efficiently obtained with large-scale data.Extensive theoretical and empirical results on multiple OoD data sets and network structures verify the superiority of our KPCA detector in efficiency and efficacy with state-of-the-art detection performance.

Approximate Natural Gradient Descent (NGD) methods are an important family of optimisers for deep learning models, which use approximate Fisher information matrices to pre-condition gradients during training. The empirical Fisher (EF) method approximates the Fisher information matrix empirically by reusing the per-sample gradients collected during back-propagation. Despite its ease of implementation, the EF approximation has its theoretical and practical limitations. This paper investigates the issue of EF, which is shown to be a major cause of its poor empirical approximation quality. An improved empirical Fisher (iEF) method is proposed to address this issue, which is motivated as a generalised NGD method from a loss reduction perspective, meanwhile retaining the practical convenience of EF.

Instrumental variables (IVs) provide a powerful strategy for identifying causal effects in the presence of unobservable confounders. Within the nonparametric setting (NPIV), recent methods have been based on nonlinear generalizations of Two-Stage Least Squares and on minimax formulations derived from moment conditions or duality. In a novel direction, we show how to formulate a functional stochastic gradient descent algorithm to tackle NPIV regression by directly minimizing the populational risk. We provide theoretical support in the form of bounds on the excess risk, and conduct numerical experiments showcasing our method's superior stability and competitive performance relative to current state-of-the-art alternatives. This algorithm enables flexible estimator choices, such as neural networks or kernel based methods, as well as non-quadratic loss functions, which may be suitable for structural equations beyond the setting of continuous outcomes and additive noise. Finally, we demonstrate this flexibility of our framework by presenting how it naturally addresses the important case of binary outcomes, which has received far less attention by recent developments in the NPIV literature.

Phylogenetic trees elucidate evolutionary relationships among species, but phylogenetic inference remains challenging due to the complexity of combining continuous (branch lengths) and discrete parameters (tree topology). Traditional Markov Chain Monte Carlo methods face slow convergence and computational burdens. Existing Variational Inference methods, which require pre-generated topologies and typically treat tree structures and branch lengths independently, may overlook critical sequence features, limiting their accuracy and flexibility. We propose PhyloGen, a novel method leveraging a pre-trained genomic language model to generate and optimize phylogenetic trees without dependence on evolutionary models or aligned sequence constraints. PhyloGen views phylogenetic inference as a conditionally constrained tree structure generation problem, jointly optimizing tree topology and branch lengths through three core modules: (i) Feature Extraction, (ii) PhyloTree Construction, and (iii) PhyloTree Structure Modeling. Meanwhile, we introduce a Scoring Function to guide the model towards a more stable gradient descent. We demonstrate the effectiveness and robustness of PhyloGen on eight real-world benchmark datasets. Visualization results confirm PhyloGen provides deeper insights into phylogenetic relationships.