Clustering
ConiVAT: Cluster Tendency Assessment and Clustering with Partial Background Knowledge
Rathore, Punit, Bezdek, James C., Santi, Paolo, Ratti, Carlo
The VAT method is a visual technique for determining the potential cluster structure and the possible number of clusters in numerical data. Its improved version, iVAT, uses a path-based distance transform to improve the effectiveness of VAT for "tough" cases. Both VAT and iVAT have also been used in conjunction with a single-linkage(SL) hierarchical clustering algorithm. However, they are sensitive to noise and bridge points between clusters in the dataset, and consequently, the corresponding VAT/iVAT images are often in-conclusive for such cases. In this paper, we propose a constraint-based version of iVAT, which we call ConiVAT, that makes use of background knowledge in the form of constraints, to improve VAT/iVAT for challenging and complex datasets. ConiVAT uses the input constraints to learn the underlying similarity metric and builds a minimum transitive dissimilarity matrix, before applying VAT to it. We demonstrate ConiVAT approach to visual assessment and single linkage clustering on nine datasets to show that, it improves the quality of iVAT images for complex datasets, and it also overcomes the limitation of SL clustering with VAT/iVAT due to "noisy" bridges between clusters. Extensive experiment results on nine datasets suggest that ConiVAT outperforms the other three semi-supervised clustering algorithms in terms of improved clustering accuracy.
Kernel learning approaches for summarising and combining posterior similarity matrices
Cabassi, Alessandra, Richardson, Sylvia, Kirk, Paul D. W.
Summary: When using Markov chain Monte Carlo (MCMC) algorithms to perform inference for Bayesian clustering models, such as mixture models, the output is typically a sample of clusterings (partitions) drawn from the posterior distribution. In practice, a key challenge is how to summarise this output. Here we build upon the notion of the posterior similarity matrix (PSM) in order to suggest new approaches for summarising the output of MCMC algorithms for Bayesian clustering models. A key contribution of our work is the observation that PSMs are positive semi-definite, and hence can be used to define probabilistically-motivated kernel matrices that capture the clustering structure present in the data. This observation enables us to employ a range of kernel methods to obtain summary clusterings, and otherwise exploit the information summarised by PSMs. For example, if we have multiple PSMs, each corresponding to a different dataset on a common set of statistical units, we may use standard methods for combining kernels in order to perform integrative clustering. We may moreover embed PSMs within predictive kernel models in order to perform outcome-guided data integration. We demonstrate the performances of the proposed methods through a range of simulation studies as well as two real data applications.
NN-EVCLUS: Neural Network-based Evidential Clustering
Evidential clustering is an approach to clustering based on the use of Dempster-Shafer mass functions to represent cluster-membership uncertainty. In this paper, we introduce a neural-network based evidential clustering algorithm, called NN-EVCLUS, which learns a mapping from attribute vectors to mass functions, in such a way that more similar inputs are mapped to output mass functions with a lower degree of conflict. The neural network can be paired with a one-class support vector machine to make it robust to outliers and allow for novelty detection. The network is trained to minimize the discrepancy between dissimilarities and degrees of conflict for all or some object pairs. Additional terms can be added to the loss function to account for pairwise constraints or labeled data, which can also be used to adapt the metric. Comparative experiments show the superiority of N-EVCLUS over state-of-the-art evidential clustering algorithms for a range of unsupervised and constrained clustering tasks involving both attribute and dissimilarity data.
An Adaptive EM Accelerator for Unsupervised Learning of Gaussian Mixture Models
Nguyen, Truong, Chen, Guangye, Chacon, Luis
We propose an Anderson Acceleration (AA) scheme for the adaptive Expectation-Maximization (EM) algorithm for unsupervised learning a finite mixture model from multivariate data (Figueiredo and Jain 2002). The proposed algorithm is able to determine the optimal number of mixture components autonomously, and converges to the optimal solution much faster than its non-accelerated version. The success of the AA-based algorithm stems from several developments rather than a single breakthrough (and without these, our tests demonstrate that AA fails catastrophically). To begin, we ensure the monotonicity of the likelihood function (a the key feature of the standard EM algorithm) with a recently proposed monotonicity-control algorithm (Henderson and Varahdan 2019), enhanced by a novel monotonicity test with little overhead. We propose nimble strategies for AA to preserve the positive definiteness of the Gaussian weights and covariance matrices strictly, and to conserve up to the second moments of the observed data set exactly. Finally, we employ a K-means clustering algorithm using the gap statistic to avoid excessively overestimating the initial number of components, thereby maximizing performance. We demonstrate the accuracy and efficiency of the algorithm with several synthetic data sets that are mixtures of Gaussians distributions of known number of components, as well as data sets generated from particle-in-cell simulations. Our numerical results demonstrate speed-ups with respect to non-accelerated EM of up to 60X when the exact number of mixture components is known, and between a few and more than an order of magnitude with component adaptivity.
A Generic Framework for Clustering Vehicle Motion Trajectories
Hoseini, Fazeleh S., Rahrovani, Sadegh, Chehreghani, Morteza Haghir
The development of autonomous vehicles requires having access to a large amount of data in the concerning driving scenarios. However, manual annotation of such driving scenarios is costly and subject to the errors in the rule-based trajectory labeling systems. To address this issue, we propose an effective non-parametric trajectory clustering framework consisting of five stages: (1) aligning trajectories and quantifying their pairwise temporal dissimilarities, (2) embedding the trajectory-based dissimilarities into a vector space, (3) extracting transitive relations, (4) embedding the transitive relations into a new vector space, and (5) clustering the trajectories with an optimal number of clusters. We investigate and evaluate the proposed framework on a challenging real-world dataset consisting of annotated trajectories. We observe that the proposed framework achieves promising results, despite the complexity caused by having trajectories of varying length. Furthermore, we extend the framework to validate the augmentation of the real dataset with synthetic data generated by a Generative Adversarial Network (GAN) where we examine whether the generated trajectories are consistent with the true underlying clusters.
G-SimCLR : Self-Supervised Contrastive Learning with Guided Projection via Pseudo Labelling
Chakraborty, Souradip, Gosthipaty, Aritra Roy, Paul, Sayak
In the realms of computer vision, it is evident that deep neural networks perform better in a supervised setting with a large amount of labeled data. The representations learned with supervision are not only of high quality but also helps the model in enhancing its accuracy. However, the collection and annotation of a large dataset are costly and time-consuming. To avoid the same, there has been a lot of research going on in the field of unsupervised visual representation learning especially in a self-supervised setting. Amongst the recent advancements in self-supervised methods for visual recognition, in SimCLR Chen et al. shows that good quality representations can indeed be learned without explicit supervision. In SimCLR, the authors maximize the similarity of augmentations of the same image and minimize the similarity of augmentations of different images. A linear classifier trained with the representations learned using this approach yields 76.5% top-1 accuracy on the ImageNet ILSVRC-2012 dataset. In this work, we propose that, with the normalized temperature-scaled cross-entropy (NT-Xent) loss function (as used in SimCLR), it is beneficial to not have images of the same category in the same batch. In an unsupervised setting, the information of images pertaining to the same category is missing. We use the latent space representation of a denoising autoencoder trained on the unlabeled dataset and cluster them with k-means to obtain pseudo labels. With this apriori information we batch images, where no two images from the same category are to be found. We report comparable performance enhancements on the CIFAR10 dataset and a subset of the ImageNet dataset. We refer to our method as G-SimCLR.
Clustering Based on Graph of Density Topology
Gao, Zhangyang, Lin, Haitao, Li, Stan. Z
Unsupervised clustering is a fundamental problem in machine learning, aimed to classify data points without labels into clusters. Numerous clustering methods including k-means [2, 19], spectral clustering [21, 23], OPTICS [1] and others [5, 7, 10, 14, 18, 21] have been proposed. However, clustering algorithms have been suffering from uneven distribution of data in high level noise, until HDBSCAN is proposed [4, 16]. A key insight of HDBSCAN is based on the density clustering assumption: in an appropriate metric space, data points tend to form clusters in high-density areas whereas noise tends to appear in low-density areas. By dropping noise points and maximizing the stability of clustering, HDBSCAN has made a great advance in classifying samples into clusters. However, HDBSCAN (and other as well) has the following weaknesses: (1) It detects the global topological structure based on the connectivity defined on individual points with its sensitivity to bridge-like noise (seeing Figure 1) between two clusters.
Machine Knowledge: Creation and Curation of Comprehensive Knowledge Bases
Weikum, Gerhard, Dong, Luna, Razniewski, Simon, Suchanek, Fabian
Equipping machines with comprehensive knowledge of the world's entities and their relationships has been a long-standing goal of AI. Over the last decade, large-scale knowledge bases, also known as knowledge graphs, have been automatically constructed from web contents and text sources, and have become a key asset for search engines. This machine knowledge can be harnessed to semantically interpret textual phrases in news, social media and web tables, and contributes to question answering, natural language processing and data analytics. This article surveys fundamental concepts and practical methods for creating and curating large knowledge bases. It covers models and methods for discovering and canonicalizing entities and their semantic types and organizing them into clean taxonomies. On top of this, the article discusses the automatic extraction of entity-centric properties. To support the long-term life-cycle and the quality assurance of machine knowledge, the article presents methods for constructing open schemas and for knowledge curation. Case studies on academic projects and industrial knowledge graphs complement the survey of concepts and methods.
Higher-Order Spectral Clustering for Geometric Graphs
Avrachenkov, Konstantin, Bobu, Andrei, Dreveton, Maximilien
The present paper is devoted to clustering geometric graphs. While the standard spectral clustering is often not effective for geometric graphs, we present an effective generalization, which we call higher-order spectral clustering. It resembles in concept the classical spectral clustering method but uses for partitioning the eigenvector associated with a higher-order eigenvalue. We establish the weak consistency of this algorithm for a wide class of geometric graphs which we call Soft Geometric Block Model. A small adjustment of the algorithm provides strong consistency. We also show that our method is effective in numerical experiments even for graphs of modest size.
Introduction to Machine Learning in R
This course material is aimed at people who are already familiar with ... What you'll learn This course is about the fundamental concepts of machine learning, facusing on neural networks. This topic is getting very hot nowadays because these learning algorithms can be used in several fields from software engineering to investment banking. Learning algorithms can recognize patterns which can help detect cancer for example. We may construct algorithms that can have a very good guess about stock prices movement in the market.