Performance Analysis
Linearized Optimal Transport for Analysis of High-Dimensional Point-Cloud and Single-Cell Data
Wang, Tianxiang, Ke, Yingtong, Bhaskar, Dhananjay, Krishnaswamy, Smita, Cloninger, Alexander
Single-cell technologies generate high-dimensional point clouds of cells, enabling detailed characterization of complex patient states and treatment responses. Yet each patient is represented by an irregular point cloud rather than a simple vector, making it difficult to directly quantify and compare biological differences between individuals. Nonlinear methods such as kernels and neural networks achieve predictive accuracy but act as black boxes, offering little biological interpretability. To address these limitations, we adapt the Linear Optimal Transport (LOT) framework to this setting, embedding irregular point clouds into a fixed-dimensional Euclidean space while preserving distributional structure. This embedding provides a principled linear representation that preserves optimal transport geometry while enabling downstream analysis. It also forms a registration between any two patients, enabling direct comparison of their cellular distributions. Within this space, LOT enables: (i) \textbf{accurate and interpretable classification} of COVID-19 patient states, where classifier weights map back to specific markers and spatial regions driving predictions; and (ii) \textbf{synthetic data generation} for patient-derived organoids, exploiting the linearity of the LOT embedding. LOT barycenters yield averaged cellular profiles representing combined conditions or samples, supporting drug interaction testing. Together, these results establish LOT as a unified framework that bridges predictive performance, interpretability, and generative modeling. By transforming heterogeneous point clouds into structured embeddings directly traceable to the original data, LOT opens new opportunities for understanding immune variation and treatment effects in high-dimensional biological systems.
Machine-learning competition to grade EEG background patterns in newborns with hypoxic-ischaemic encephalopathy
Magarelli, Fabio, Boylan, Geraldine B., Montazeri, Saeed, O'Sullivan, Feargal, Lightbody, Dominic, Ashoori, Minoo, Skoric, Tamara, O'Toole, John M.
Machine learning (ML) has the potential to support and improve expert performance in monitoring the brain function of at-risk newborns. Developing accurate and reliable ML models depends on access to high-quality, annotated data, a resource in short supply. ML competitions address this need by providing researchers access to expertly annotated datasets, fostering shared learning through direct model comparisons, and leveraging the benefits of crowdsourcing diverse expertise. We compiled a retrospective dataset containing 353 hours of EEG from 102 individual newborns from a multi-centre study. The data was fully anonymised and divided into training, testing, and held-out validation datasets. EEGs were graded for the severity of abnormal background patterns. Next, we created a web-based competition platform and hosted a machine learning competition to develop ML models for classifying the severity of EEG background patterns in newborns. After the competition closed, the top 4 performing models were evaluated offline on a separate held-out validation dataset. Although a feature-based model ranked first on the testing dataset, deep learning models generalised better on the validation sets. All methods had a significant decline in validation performance compared to the testing performance. This highlights the challenges for model generalisation on unseen data, emphasising the need for held-out validation datasets in ML studies with neonatal EEG. The study underscores the importance of training ML models on large and diverse datasets to ensure robust generalisation. The competition's outcome demonstrates the potential for open-access data and collaborative ML development to foster a collaborative research environment and expedite the development of clinical decision-support tools for neonatal neuromonitoring.
The Scales of Justitia: A Comprehensive Survey on Safety Evaluation of LLMs
Liu, Songyang, Li, Chaozhuo, Qiu, Jiameng, Zhang, Xi, Huang, Feiran, Zhang, Litian, Hei, Yiming, Yu, Philip S.
With the rapid advancement of artificial intelligence, Large Language Models (LLMs) have shown remarkable capabilities in Natural Language Processing (NLP), including content generation, human-computer interaction, machine translation, and code generation. However, their widespread deployment has also raised significant safety concerns. In particular, LLM-generated content can exhibit unsafe behaviors such as toxicity, bias, or misinformation, especially in adversarial contexts, which has attracted increasing attention from both academia and industry. Although numerous studies have attempted to evaluate these risks, a comprehensive and systematic survey on safety evaluation of LLMs is still lacking. This work aims to fill this gap by presenting a structured overview of recent advances in safety evaluation of LLMs. Specifically, we propose a four-dimensional taxonomy: (i) Why to evaluate, which explores the background of safety evaluation of LLMs, how they differ from general LLMs evaluation, and the significance of such evaluation; (ii) What to evaluate, which examines and categorizes existing safety evaluation tasks based on key capabilities, including dimensions such as toxicity, robustness, ethics, bias and fairness, truthfulness, and related aspects; (iii) Where to evaluate, which summarizes the evaluation metrics, datasets and benchmarks currently used in safety evaluations; (iv) How to evaluate, which reviews existing mainstream evaluation methods based on the roles of the evaluators and some evaluation frameworks that integrate the entire evaluation pipeline. Finally, we identify the challenges in safety evaluation of LLMs and propose promising research directions to promote further advancement in this field. We emphasize the necessity of prioritizing safety evaluation to ensure the reliable and responsible deployment of LLMs in real-world applications.
SAFE: Multitask Failure Detection for Vision-Language-Action Models
Gu, Qiao, Ju, Yuanliang, Sun, Shengxiang, Gilitschenski, Igor, Nishimura, Haruki, Itkina, Masha, Shkurti, Florian
While vision-language-action models (VLAs) have shown promising robotic behaviors across a diverse set of manipulation tasks, they achieve limited success rates when deployed on novel tasks out of the box. To allow these policies to safely interact with their environments, we need a failure detector that gives a timely alert such that the robot can stop, backtrack, or ask for help. However, existing failure detectors are trained and tested only on one or a few specific tasks, while generalist VLAs require the detector to generalize and detect failures also in unseen tasks and novel environments. In this paper, we introduce the multitask failure detection problem and propose SAFE, a failure detector for generalist robot policies such as VLAs. We analyze the VLA feature space and find that VLAs have sufficient high-level knowledge about task success and failure, which is generic across different tasks. Based on this insight, we design SAFE to learn from VLA internal features and predict a single scalar indicating the likelihood of task failure. SAFE is trained on both successful and failed rollouts and is evaluated on unseen tasks. SAFE is compatible with different policy architectures. We test it on OpenVLA, $π_0$, and $π_0$-FAST in both simulated and real-world environments extensively. We compare SAFE with diverse baselines and show that SAFE achieves state-of-the-art failure detection performance and the best trade-off between accuracy and detection time using conformal prediction. More qualitative results and code can be found at the project webpage: https://vla-safe.github.io/
When Kernels Multiply, Clusters Unify: Fusing Embeddings with the Kronecker Product
Wu, Youqi, Zhang, Jingwei, Farnia, Farzan
State-of-the-art embeddings often capture distinct yet complementary discriminative features: For instance, one image embedding model may excel at distinguishing fine-grained textures, while another focuses on object-level structure. Motivated by this observation, we propose a principled approach to fuse such complementary representations through kernel multiplication. Multiplying the kernel similarity functions of two embeddings allows their discriminative structures to interact, producing a fused representation whose kernel encodes the union of the clusters identified by each parent embedding. This formulation also provides a natural way to construct joint kernels for paired multi-modal data (e.g., image-text tuples), where the product of modality-specific kernels inherits structure from both domains. We highlight that this kernel product is mathematically realized via the Kronecker product of the embedding feature maps, yielding our proposed KrossFuse framework for embedding fusion. To address the computational cost of the resulting high-dimensional Kronecker space, we further develop RP-KrossFuse, a scalable variant that leverages random projections for efficient approximation. As a key application, we use this framework to bridge the performance gap between cross-modal embeddings (e.g., CLIP, BLIP) and unimodal experts (e.g., DINOv2, E5). Experiments show that RP-KrossFuse effectively integrates these models, enhancing modality-specific performance while preserving cross-modal alignment. The project code is available at https://github.com/yokiwuuu/KrossFuse.
Large Language Models Have Intrinsic Meta-Cognition, but Need a Good Lens
Ma, Ziyang, Yuan, Qingyue, Wang, Zhenglin, Zhou, Deyu
Previous research has primarily focused on the cognitive error detection capabilities of Large Language Models (LLMs), often prompting them to analyze mistakes in reasoning chains. However, few studies have examined the meta-cognitive abilities of LLMs (e.g., their self-awareness of step errors), which are crucial for their reliability. While studies on LLM self-evaluation present some measures, such as perplexity, which can reflect the answer correctness and be viewed as the lens of meta-cognition, they lack step-level analysis and adaptation. This paper studies the evaluation of LLM meta-cognition using the current lenses and how to improve these lenses. Specifically, we propose AutoMeco, an Automated Meta-cognition Evaluation framework for benchmarking the existing lenses. Furthermore, a training-free Markovian Intrinsic Reward Adjustment strategy, MIRA, is proposed to boost current meta-cognition lenses. Experimental results on three mathematical reasoning datasets and three LLMs show the reasonableness of AutoMeco by comparing it with Best-of-N verification. Moreover, the meta-cognition ability of LLMs can be better evaluated using MIRA.
Adversarial Paraphrasing: A Universal Attack for Humanizing AI-Generated Text
Cheng, Yize, Sadasivan, Vinu Sankar, Saberi, Mehrdad, Saha, Shoumik, Feizi, Soheil
The increasing capabilities of Large Language Models (LLMs) have raised concerns about their misuse in AI-generated plagiarism and social engineering. While various AI-generated text detectors have been proposed to mitigate these risks, many remain vulnerable to simple evasion techniques such as paraphrasing. However, recent detectors have shown greater robustness against such basic attacks. In this work, we introduce Adversarial Paraphrasing, a training-free attack framework that universally humanizes any AI-generated text to evade detection more effectively. Our approach leverages an off-the-shelf instruction-following LLM to paraphrase AI-generated content under the guidance of an AI text detector, producing adversarial examples that are specifically optimized to bypass detection. Extensive experiments show that our attack is both broadly effective and highly transferable across several detection systems. For instance, compared to simple paraphrasing attack--which, ironically, increases the true positive at 1% false positive (T@1%F) by 8.57% on RADAR and 15.03% on Fast-DetectGPT--adversarial paraphrasing, guided by OpenAI-RoBERTa-Large, reduces T@1%F by 64.49% on RADAR and a striking 98.96% on Fast-DetectGPT. Across a diverse set of detectors--including neural network-based, watermark-based, and zero-shot approaches--our attack achieves an average T@1%F reduction of 87.88% under the guidance of OpenAI-RoBERTa-Large. We also analyze the tradeoff between text quality and attack success to find that our method can significantly reduce detection rates, with mostly a slight degradation in text quality. Our adversarial setup highlights the need for more robust and resilient detection strategies in the light of increasingly sophisticated evasion techniques.
Embracing Contradiction: Theoretical Inconsistency Will Not Impede the Road of Building Responsible AI Systems
This position paper argues that the theoretical inconsistency often observed among Responsible AI (RAI) metrics, such as differing fairness definitions or tradeoffs between accuracy and privacy, should be embraced as a valuable feature rather than a flaw to be eliminated. We contend that navigating these inconsistencies, by treating metrics as divergent objectives, yields three key benefits: (1) Normative Pluralism: Maintaining a full suite of potentially contradictory metrics ensures that the diverse moral stances and stakeholder values inherent in RAI are adequately represented. (2) Epistemological Completeness: The use of multiple, sometimes conflicting, metrics allows for a more comprehensive capture of multifaceted ethical concepts, thereby preserving greater informational fidelity about these concepts than any single, simplified definition. (3) Implicit Regularization: Jointly optimizing for theoretically conflicting objectives discourages overfitting to one specific metric, steering models towards solutions with enhanced generalization and robustness under real-world complexities. In contrast, efforts to enforce theoretical consistency by simplifying or pruning metrics risk narrowing this value diversity, losing conceptual depth, and degrading model performance. We therefore advocate for a shift in RAI theory and practice: from getting trapped in inconsistency to characterizing acceptable inconsistency thresholds and elucidating the mechanisms that permit robust, approximated consistency in practice.
MedAgentBoard: Benchmarking Multi-Agent Collaboration with Conventional Methods for Diverse Medical Tasks
Zhu, Yinghao, He, Ziyi, Hu, Haoran, Zheng, Xiaochen, Zhang, Xichen, Wang, Zixiang, Gao, Junyi, Ma, Liantao, Yu, Lequan
The rapid advancement of Large Language Models (LLMs) has stimulated interest in multi-agent collaboration for addressing complex medical tasks. However, the practical advantages of multi-agent collaboration approaches remain insufficiently understood. Existing evaluations often lack generalizability, failing to cover diverse tasks reflective of real-world clinical practice, and frequently omit rigorous comparisons against both single-LLM-based and established conventional methods. To address this critical gap, we introduce MedAgentBoard, a comprehensive benchmark for the systematic evaluation of multi-agent collaboration, single-LLM, and conventional approaches. MedAgentBoard encompasses four diverse medical task categories: (1) medical (visual) question answering, (2) lay summary generation, (3) structured Electronic Health Record (EHR) predictive modeling, and (4) clinical workflow automation, across text, medical images, and structured EHR data. Our extensive experiments reveal a nuanced landscape: while multi-agent collaboration demonstrates benefits in specific scenarios, such as enhancing task completeness in clinical workflow automation, it does not consistently outperform advanced single LLMs (e.g., in textual medical QA) or, critically, specialized conventional methods that generally maintain better performance in tasks like medical VQA and EHR-based prediction. MedAgentBoard offers a vital resource and actionable insights, emphasizing the necessity of a task-specific, evidence-based approach to selecting and developing AI solutions in medicine. It underscores that the inherent complexity and overhead of multi-agent collaboration must be carefully weighed against tangible performance gains. All code, datasets, detailed prompts, and experimental results are open-sourced at https://medagentboard.netlify.app/.
AnomalyMatch: Discovering Rare Objects of Interest with Semi-supervised and Active Learning
Gómez, Pablo, Ruhberg, Laslo E., Nardone, Maria Teresa, O'Ryan, David
Anomaly detection in large datasets is essential in astronomy and computer vision. However, due to a scarcity of labelled data, it is often infeasible to apply supervised methods to anomaly detection. We present AnomalyMatch, an anomaly detection framework combining the semi-supervised FixMatch algorithm using EfficientNet classifiers with active learning. AnomalyMatch is tailored for large-scale applications and integrated into the ESA Datalabs science platform. In this method, we treat anomaly detection as a binary classification problem and efficiently utilise limited labelled and abundant unlabelled images for training. We enable active learning via a user interface for verification of high-confidence anomalies and correction of false positives. Evaluations on the GalaxyMNIST astronomical dataset and the miniImageNet natural-image benchmark under severe class imbalance display strong performance. Starting from five to ten labelled anomalies, we achieve an average AUROC of 0.96 (miniImageNet) and 0.89 (GalaxyMNIST), with respective AUPRC of 0.82 and 0.77. After three active learning cycles, anomalies are ranked with 76% (miniImageNet) to 94% (GalaxyMNIST) precision in the top 1% of the highest-ranking images by score. We compare to the established Astronomaly software on selected 'odd' galaxies from the 'Galaxy Zoo - The Galaxy Challenge' dataset, achieving comparable performance with an average AUROC of 0.83. Our results underscore the exceptional utility and scalability of this approach for anomaly discovery, highlighting the value of specialised approaches for domains characterised by severe label scarcity.