Clinical decision making from magnetic resonance imaging (MRI) combines complementary information from multiple MRI sequences (defined as 'modalities'). MRI image registration aims to geometrically 'pair' diagnoses from different modalities, time points and slices. Both intra- and inter-modality MRI registration are essential components in clinical MRI settings. Further, an MRI image processing pipeline that can address both afine and non-rigid registration is critical, as both types of deformations may be occuring in real MRI data scenarios. Unlike image classification, explainability is not commonly addressed in image registration deep learning (DL) methods, as it is challenging to interpet model-data behaviours against transformation fields. To properly address this, we incorporate Grad-CAM-based explainability frameworks in each major component of our unsupervised multi-modal and multi-organ image registration DL methodology. We previously demonstrated that we were able to reach superior performance (against the current standard Syn method). In this work, we show that our DL model becomes fully explainable, setting the framework to generalise our approach on further medical imaging data.

Hyperdimensional computing (HDC) is an emerging computing paradigm that imitates the brain's structure to offer a powerful and efficient processing and learning model. In HDC, the data are encoded with long vectors, called hypervectors, typically with a length of 1K to 10K. The literature provides several encoding techniques to generate orthogonal or correlated hypervectors, depending on the intended application. The existing surveys in the literature often focus on the overall aspects of HDC systems, including system inputs, primary computations, and final outputs. However, this study takes a more specific approach. It zeroes in on the HDC system input and the generation of hypervectors, directly influencing the hypervector encoding process. This survey brings together various methods for hypervector generation from different studies and explores the limitations, challenges, and potential benefits they entail. Through a comprehensive exploration of this survey, readers will acquire a profound understanding of various encoding types in HDC and gain insights into the intricate process of hypervector generation for diverse applications.

Pattern discovery is a machine learning technique that aims to find sets of items, subsequences, or substructures that are present in a dataset with a higher frequency value than a manually set threshold. This process helps to identify recurring patterns or relationships within the data, allowing for valuable insights and knowledge extraction. In this work, we propose Information Gained Subgroup Discovery (IGSD), a new SD algorithm for pattern discovery that combines Information Gain (IG) and Odds Ratio (OR) as a multi-criteria for pattern selection. The algorithm tries to tackle some limitations of state-of-the-art SD algorithms like the need for fine-tuning of key parameters for each dataset, usage of a single pattern search criteria set by hand, usage of non-overlapping data structures for subgroup space exploration, and the impossibility to search for patterns by fixing some relevant dataset variables. Thus, we compare the performance of IGSD with two state-of-the-art SD algorithms: FSSD and SSD++. Eleven datasets are assessed using these algorithms. For the performance evaluation, we also propose to complement standard SD measures with IG, OR, and p-value. Obtained results show that FSSD and SSD++ algorithms provide less reliable patterns and reduced sets of patterns than IGSD algorithm for all datasets considered. Additionally, IGSD provides better OR values than FSSD and SSD++, stating a higher dependence between patterns and targets. Moreover, patterns obtained for one of the datasets used, have been validated by a group of domain experts. Thus, patterns provided by IGSD show better agreement with experts than patterns obtained by FSSD and SSD++ algorithms. These results demonstrate the suitability of the IGSD as a method for pattern discovery and suggest that the inclusion of non-standard SD metrics allows to better evaluate discovered patterns.

Graph Neural Networks (GNNs) have proven to be effective in processing and learning from graph-structured data. However, previous works mainly focused on understanding single graph inputs while many real-world applications require pair-wise analysis for graph-structured data (e.g., scene graph matching, code searching, and drug-drug interaction prediction). To this end, recent works have shifted their focus to learning the interaction between pairs of graphs. Despite their improved performance, these works were still limited in that the interactions were considered at the node-level, resulting in high computational costs and suboptimal performance. To address this issue, we propose a novel and efficient graph-level approach for extracting interaction representations using co-attention in graph pooling. Our method, Co-Attention Graph Pooling (CAGPool), exhibits competitive performance relative to existing methods in both classification and regression tasks using real-world datasets, while maintaining lower computational complexity.

Image registration is the process of bringing different images into a common coordinate system - a technique widely used in various applications of computer vision, such as remote sensing, image retrieval, and, most commonly, medical imaging. Deep learning based techniques have been applied successfully to tackle various complex medical image processing problems, including medical image registration. Over the years, several image registration techniques have been proposed using deep learning. Deformable image registration techniques such as Voxelmorph have been successful in capturing finer changes and providing smoother deformations. However, Voxelmorph, as well as ICNet and FIRE, do not explicitly encode global dependencies (i.e. the overall anatomical view of the supplied image) and, therefore, cannot track large deformations. In order to tackle the aforementioned problems, this paper extends the Voxelmorph approach in three different ways. To improve the performance in case of small as well as large deformations, supervision of the model at different resolutions has been integrated using a multi-scale UNet. To support the network to learn and encode the minute structural co-relations of the given image-pairs, a self-constructing graph network (SCGNet) has been used as the latent of the multi-scale UNet - which can improve the learning process of the model and help the model to generalise better. And finally, to make the deformations inverse-consistent, cycle consistency loss has been employed. On the task of registration of brain MRIs, the proposed method achieved significant improvements over ANTs and VoxelMorph, obtaining a Dice score of 0.8013 \pm 0.0243 for intramodal and 0.6211 \pm 0.0309 for intermodal, while VoxelMorph achieved 0.7747 \pm 0.0260 and 0.6071 \pm 0.0510, respectively

Tree data are ubiquitous, especially in biology and computer science, but also non-Euclidean [9], which prevents them from being analysed by classical statistical methods adapted to multidimensional data. Therefore, they require the development of specific tools that take into account their structured nature. Among such techniques, frequent pattern mining [1] consists in identifying patterns, i.e. substructures, that appear often in the data. The more elaborate the patterns searched, the more difficult the problem is: the issue is to preserve a reasonable algorithmic complexity that allows the search of a given family of patterns in a reasonable time. Different types of patterns have been considered in the literature to analyse tree data (see the survey [16] and the references therein) with a strong interest in a specific family of patterns called subtrees [3, 23]. In these two papers, only subtrees that appear more often than a given threshold are considered. Reverse search [5] is a generic approach for enumerating frequent patterns in a dataset that consists in (i) building an enumeration tree of substructures, and then (ii) pruning it to keep only frequent patterns.

Reading text in real-world scenarios often requires understanding the context surrounding it, especially when dealing with poor-quality text. However, current scene text recognizers are unaware of the bigger picture as they operate on cropped text images. In this study, we harness the representative capabilities of modern vision-language models, such as CLIP, to provide scene-level information to the crop-based recognizer. We achieve this by fusing a rich representation of the entire image, obtained from the vision-language model, with the recognizer word-level features via a gated cross-attention mechanism. This component gradually shifts to the context-enhanced representation, allowing for stable fine-tuning of a pretrained recognizer. We demonstrate the effectiveness of our model-agnostic framework, CLIPTER (CLIP TExt Recognition), on leading text recognition architectures and achieve state-of-the-art results across multiple benchmarks. Furthermore, our analysis highlights improved robustness to out-of-vocabulary words and enhanced generalization in low-data regimes.

With the increasing application of robots, stable and efficient Visual Odometry (VO) algorithms are becoming more and more important. Based on the Fourier Mellin Transformation (FMT) algorithm, the extended Fourier Mellin Transformation (eFMT) is an image registration approach that can be applied to downward-looking cameras, for example on aerial and underwater vehicles. eFMT extends FMT to multi-depth scenes and thus more application scenarios. It is a visual odometry method which estimates the pose transformation between three overlapping images. On this basis, we develop an optimized eFMT algorithm that improves certain aspects of the method and combines it with back-end optimization for the small loop of three consecutive frames. For this we investigate the extraction of uncertainty information from the eFMT registration, the related objective function and the graph-based optimization. Finally, we design a series of experiments to investigate the properties of this approach and compare it with other VO and SLAM (Simultaneous Localization and Mapping) algorithms. The results show the superior accuracy and speed of our o-eFMT approach, which is published as open source.

Multimodal image registration is a challenging but essential step for numerous image-guided procedures. Most registration algorithms rely on the computation of complex, frequently non-differentiable similarity metrics to deal with the appearance discrepancy of anatomical structures between imaging modalities. Recent Machine Learning based approaches are limited to specific anatomy-modality combinations and do not generalize to new settings. We propose a generic framework for creating expressive cross-modal descriptors that enable fast deformable global registration. We achieve this by approximating existing metrics with a dot-product in the feature space of a small convolutional neural network (CNN) which is inherently differentiable can be trained without registered data. Our method is several orders of magnitude faster than local patch-based metrics and can be directly applied in clinical settings by replacing the similarity measure with the proposed one. Experiments on three different datasets demonstrate that our approach generalizes well beyond the training data, yielding a broad capture range even on unseen anatomies and modality pairs, without the need for specialized retraining. We make our training code and data publicly available.

With the widespread use of social networks, detecting the topics discussed in these networks has become a significant challenge. The current works are mainly based on frequent pattern mining or semantic relations, and the language structure is not considered. The meaning of language structural methods is to discover the relationship between words and how humans understand them. Therefore, this paper uses the Concept of the Imitation of the Mental Ability of Word Association to propose a topic detection framework in social networks. This framework is based on the Human Word Association method. A special extraction algorithm has also been designed for this purpose. The performance of this method is evaluated on the FA-CUP dataset. It is a benchmark dataset in the field of topic detection. The results show that the proposed method is a good improvement compared to other methods, based on the Topic-recall and the keyword F1 measure. Also, most of the previous works in the field of topic detection are limited to the English language, and the Persian language, especially microblogs written in this language, is considered a low-resource language. Therefore, a data set of Telegram posts in the Farsi language has been collected. Applying the proposed method to this dataset also shows that this method works better than other topic detection methods.