This paper introduces an Artificial Intelligence (AI) foundation model for time series in engineering applications, where causal operations are required for real-time monitoring and control. Since engineering time series are governed by physical, rather than linguistic, laws, large-language-model-based AI foundation models may be ineffective or inefficient. Building on the classical innovations representation theory of Wiener, Kallianpur, and Rosenblatt, we propose Time Series GPT (TS-GPT) -- an innovations-representation-based Generative Pre-trained Transformer for engineering monitoring and control. As an example of foundation model adaptation, we consider Probabilistic Generative Forecasting, which produces future time series samples from conditional probability distributions given past realizations. We demonstrate the effectiveness of TS-GPT in forecasting real-time locational marginal prices using historical data from U.S. independent system operators.

We introduce DiffKnock, a diffusion-based knockoff framework for high-dimensional feature selection with finite-sample false discovery rate (FDR) control. DiffKnock addresses two key limitations of existing knockoff methods: preserving complex feature dependencies and detecting non-linear associations. Our approach trains diffusion models to generate valid knockoffs and uses neural network--based gradient and filter statistics to construct antisymmetric feature importance measures. Through simulations, we showed that DiffKnock achieved higher power than autoencoder-based knockoffs while maintaining target FDR, indicating its superior performance in scenarios involving complex non-linear architectures. Applied to murine single-cell RNA-seq data of LPS-stimulated macrophages, DiffKnock identifies canonical NF-$κ$B target genes (Ccl3, Hmox1) and regulators (Fosb, Pdgfb). These results highlight that, by combining the flexibility of deep generative models with rigorous statistical guarantees, DiffKnock is a powerful and reliable tool for analyzing single-cell RNA-seq data, as well as high-dimensional and structured data in other domains.

Computational imaging methods increasingly rely on powerful generative diffusion models to tackle challenging image restoration tasks. In particular, state-of-the-art zero-shot image inverse solvers leverage distilled text-to-image latent diffusion models (LDMs) to achieve unprecedented accuracy and perceptual quality with high computational efficiency. However, extending these advances to high-definition video restoration remains a significant challenge, due to the need to recover fine spatial detail while capturing subtle temporal dependencies. Consequently, methods that naively apply image-based LDM priors on a frame-by-frame basis often result in temporally inconsistent reconstructions. We address this challenge by leveraging recent advances in Video Consistency Models (VCMs), which distill video latent diffusion models into fast generators that explicitly capture temporal causality. Building on this foundation, we propose LVTINO, the first zero-shot or plug-and-play inverse solver for high definition video restoration with priors encoded by VCMs. Our conditioning mechanism bypasses the need for automatic differentiation and achieves state-of-the-art video reconstruction quality with only a few neural function evaluations, while ensuring strong measurement consistency and smooth temporal transitions across frames. Extensive experiments on a diverse set of video inverse problems show significant perceptual improvements over current state-of-the-art methods that apply image LDMs frame by frame, establishing a new benchmark in both reconstruction fidelity and computational efficiency.

Standard discrete diffusion models treat all unobserved states identically by mapping them to an absorbing [MASK] token. This creates an 'information void' where semantic information that could be inferred from unmasked tokens is lost between denoising steps. We introduce Continuously Augmented Discrete Diffusion (CADD), a framework that augments the discrete state space with a paired diffusion in a continuous latent space. This yields graded, gradually corrupted states in which masked tokens are represented by noisy yet informative latent vectors rather than collapsed 'information voids'. At each reverse step, CADD may leverage the continuous latent as a semantic hint to guide discrete denoising. The design is clean and compatible with existing discrete diffusion training. At sampling time, the strength and choice of estimator for the continuous latent vector enables a controlled trade-off between mode-coverage (generating diverse outputs) and mode-seeking (generating contextually precise outputs) behaviors. Empirically, we demonstrate CADD improves generative quality over mask-based diffusion across text generation, image synthesis, and code modeling, with consistent gains on both qualitative and quantitative metrics against strong discrete baselines.

Linking textual values in tabular data to their corresponding entities in a Knowledge Base is a core task across a variety of data integration and enrichment applications. Although Large Language Models (LLMs) have shown State-of-The-Art performance in Entity Linking (EL) tasks, their deployment in real-world scenarios requires not only accurate predictions but also reliable uncertainty estimates, which require resource-demanding multi-shot inference, posing serious limits to their actual applicability. As a more efficient alternative, we investigate a self-supervised approach for estimating uncertainty from single-shot LLM outputs using token-level features, reducing the need for multiple generations. Evaluation is performed on an EL task on tabular data across multiple LLMs, showing that the resulting uncertainty estimates are highly effective in detecting low-accuracy outputs. This is achieved at a fraction of the computational cost, ultimately supporting a cost-effective integration of uncertainty measures into LLM-based EL workflows. The method offers a practical way to incorporate uncertainty estimation into EL workflows with limited computational overhead.

Simulation-based inference (SBI) is transforming experimental sciences by enabling parameter estimation in complex non-linear models from simulated data. A persistent challenge, however, is model misspecification: simulators are only approximations of reality, and mismatches between simulated and real data can yield biased or overconfident posteriors. We address this issue by introducing Flow Matching Corrected Posterior Estimation (FMCPE), a framework that leverages the flow matching paradigm to refine simulation-trained posterior estimators using a small set of real calibration samples. Our approach proceeds in two stages: first, a posterior approximator is trained on abundant simulated data; second, flow matching transports its predictions toward the true posterior supported by real observations, without requiring explicit knowledge of the misspecification. This design enables FMCPE to combine the scalability of SBI with robustness to distributional shift. Across synthetic benchmarks and real-world datasets, we show that our proposal consistently mitigates the effects of misspecification, delivering improved inference accuracy and uncertainty calibration compared to standard SBI baselines, while remaining computationally efficient.

Humans intuitively perceive complex social signals in visual scenes, yet it remains unclear whether state-of-the-art AI models encode the same similarity structure. We study (Q1) whether modern video and language models capture human-perceived similarity in social videos, and (Q2) how to instill this structure into models using human behavioral data. To address this, we introduce a new benchmark of over 49,000 odd-one-out similarity judgments on 250 three-second video clips of social interactions, and discover a modality gap: despite the task being visual, caption-based language embeddings align better with human similarity than any pretrained video model. We close this gap by fine-tuning a TimeSformer video model on these human judgments with our novel hybrid triplet-RSA objective using low-rank adaptation (LoRA), aligning pairwise distances to human similarity. This fine-tuning protocol yields significantly improved alignment with human perceptions on held-out videos in terms of both explained variance and odd-one-out triplet accuracy. Variance partitioning shows that the fine-tuned video model increases shared variance with language embeddings and explains additional unique variance not captured by the language model. Finally, we test transfer via linear probes and find that human-similarity fine-tuning strengthens the encoding of social-affective attributes (intimacy, valence, dominance, communication) relative to the pretrained baseline. Overall, our findings highlight a gap in pretrained video models' social recognition and demonstrate that behavior-guided fine-tuning shapes video representations toward human social perception.

Recent technological advances in smartphones and communications, including the growth of such online platforms as massive social media networks such as X (formerly known as Twitter) endangers young people and their emotional well-being by exposing them to cyberbullying, taunting, and bullying content. Most proposed approaches for automatically detecting cyberbullying have been developed around the English language, and methods for detecting Arabic-language cyberbullying are scarce. Methods for detecting Arabic-language cyberbullying are especially scarce. This paper aims to enhance the effectiveness of methods for detecting cyberbullying in Arabic-language content. We assembled a dataset of 10,662 X posts, pre-processed the data, and used the kappa tool to verify and enhance the quality of our annotations. We conducted four experiments to test numerous deep learning models for automatically detecting Arabic-language cyberbullying. We first tested a long short-term memory (LSTM) model and a bidirectional long short-term memory (Bi-LSTM) model with several experimental word embeddings. We also tested the LSTM and Bi-LSTM models with a novel pre-trained bidirectional encoder from representations (BERT) and then tested them on a different experimental models BERT again. LSTM-BERT and Bi-LSTM-BERT demonstrated a 97% accuracy. Bi-LSTM with FastText embedding word performed even better, achieving 98% accuracy. As a result, the outcomes are generalize

Mass spectrometry metabolomics generates vast amounts of data requiring advanced methods for interpretation. Knowledge graphs address these challenges by structuring mass spectrometry data, metabolite information, and their relationships into a connected network (Gaudry et al. 2024). However, effective use of a knowledge graph demands an in-depth understanding of its ontology and its query language syntax. To overcome this, we designed MetaboT, an AI system utilizing large language models (LLMs) to translate user questions into SPARQL semantic query language for operating on knowledge graphs (Steve Harris 2013). We demonstrate its effectiveness using the Experimental Natural Products Knowledge Graph (ENPKG), a large-scale public knowledge graph for plant natural products (Gaudry et al. 2024).MetaboT employs specialized AI agents for handling user queries and interacting with the knowledge graph by breaking down complex tasks into discrete components, each managed by a specialised agent (Fig. 1a). The multi-agent system is constructed using the LangChain and LangGraph libraries, which facilitate the integration of LLMs with external tools and information sources (LangChain, n.d.). The query generation process follows a structured workflow. First, the Entry Agent determines if the question is new or a follow-up to previous interactions. New questions are forwarded to the Validator Agent, which verifies if the question is related to the knowledge graph. Then, the valid question is sent to the Supervisor Agent, which identifies if the question requires chemical conversions or standardized identifiers. In this case it delegates the question to the Knowledge Graph Agent, which can use tools to extract necessary details, such as URIs or taxonomies of chemical names, from the user query. Finally, an agent responsible for crafting the SPARQL queries equipped with the ontology of the knowledge graph uses the provided identifiers to generate the query. Then, the system executes the generated query against the metabolomics knowledge graph and returns structured results to the user (Fig. 1b). To assess the performance of MetaboT we have curated 50 metabolomics-related questions and their expected answers. In addition to submitting these questions to MetaboT, we evaluated a baseline by submitting them to a standard LLM (GPT-4o) with a prompt that incorporated the knowledge graph ontology but did not provide specific entity IDs. This baseline achieved only 8.16% accuracy, compared to MetaboT's 83.67%, underscoring the necessity of our multi-agent system for accurately retrieving entities and generating correct SPARQL queries. MetaboT demonstrates promising performance as a conversational question-answering assistant, enabling researchers to retrieve structured metabolomics data through natural language queries. By automating the generation and execution of SPARQL queries, it removes technical barriers that have traditionally hindered access to knowledge graphs. Importantly, MetaboT leverages the capabilities of LLMs while maintaining experimentally grounded query generation, ensuring that outputs remain aligned with domain-specific standards and data structures. This approach facilitates data-driven discoveries by bridging the gap between complex semantic technologies and user-friendly interaction. MetaboT is accessible at [https://metabot.holobiomicslab.eu/], and its source code is available at [https://github.com/HolobiomicsLab/MetaboT].

Reasoning protocols such as Chain of Thought (CoT) and Tree of Thought (ToT) organize internal deliberation but lack an explicit mechanism for external questioning that elicits self-revision. We present FOR-Prompting (From Objection to Revision Prompting), an asymmetric protocol where a Defender proposes an answer, an Objectioner raises question-style objections with no direct fixes, and a Host enforces consistency and closure. On GSM8K we observe about a 22% point gain over single-prompt and accuracy on par with CoT, with more than 10% higher ratings in reasoning and coherence from a uniform GPT 4.1 judge. FOR-Prompting also corrects mistakes without tools or human supervision on tricky queries, and improves performance for small-scale model (approx. 19% accuracy improved on Llama3.2:1b for GSM8K task), highlighting promise for small models and on personal device use. Beyond factual QA, qualitative analyses on open-ended tasks show enhanced exploration and refinement, with dialogue traces that make assumptions and trade-offs explicit. The protocol is model agnostic and operates purely at the prompt level through role-structured turns, so it works with hosted and local models of different sizes without retraining, and it supports large-scale study of objection-guided reasoning.