Directed Networks
A Framework for Testing Identifiability of Bayesian Models of Perception
Bayesian observer models are very effective in describing human performance in perceptual tasks, so much so that they are trusted to faithfully recover hidden mental representations of priors, likelihoods, or loss functions from the data. However, the intrinsic degeneracy of the Bayesian framework, as multiple combinations of elements can yield empirically indistinguishable results, prompts the question of model identifiability. We propose a novel framework for a systematic testing of the identifiability of a significant class of Bayesian observer models, with practical applications for improving experimental design. We examine the theoretical identifiability of the inferred internal representations in two case studies. First, we show which experimental designs work better to remove the underlying degeneracy in a time interval estimation task. Second, we find that the reconstructed representations in a speed perception task under a slow-speed prior are fairly robust.
Gaussian Process Volatility Model
The prediction of time-changing variances is an important task in the modeling of financial data. Standard econometric models are often limited as they assume rigid functional relationships for the evolution of the variance. Moreover, functional parameters are usually learned by maximum likelihood, which can lead to overfitting. To address these problems we introduce GP-Vol, a novel non-parametric model for time-changing variances based on Gaussian Processes. This new model can capture highly flexible functional relationships for the variances. Furthermore, we introduce a new online algorithm for fast inference in GP-Vol. This method is much faster than current offline inference procedures and it avoids overfitting problems by following a fully Bayesian approach. Experiments with financial data show that GP-Vol performs significantly better than current standard alternatives.
Bayesian Mixture-of-Experts: Towards Making LLMs Know What They Don't Know
The Mixture-of-Experts (MoE) architecture has enabled the creation of massive yet efficient Large Language Models (LLMs). However, the standard deterministic routing mechanism presents a significant limitation: its inherent brittleness is a key contributor to model miscalibration and overconfidence, resulting in systems that often do not know what they don't know. This thesis confronts this challenge by proposing a structured \textbf{Bayesian MoE routing framework}. Instead of forcing a single, deterministic expert selection, our approach models a probability distribution over the routing decision itself. We systematically investigate three families of methods that introduce this principled uncertainty at different stages of the routing pipeline: in the \textbf{weight-space}, the \textbf{logit-space}, and the final \textbf{selection-space}. Through a series of controlled experiments on a 3-billion parameter MoE model, we demonstrate that this framework significantly improves routing stability, in-distribution calibration, and out-of-distribution (OoD) detection. The results show that by targeting this core architectural component, we can create a more reliable internal uncertainty signal. This work provides a practical and computationally tractable pathway towards building more robust and self-aware LLMs, taking a crucial step towards making them know what they don't know.
Profit over Proxies: A Scalable Bayesian Decision Framework for Optimizing Multi-Variant Online Experiments
Pillai, Srijesh, Chandrawat, Rajesh Kumar
Online controlled experiments (A/B tests) are fundamental to data - driven decision - making in the digital economy. However, their real - world application is frequently compromised by two critical shortcomings: the use of statistically flawed heuristics like " p - value peeking", which inflates false positive rates, and an over - reliance on proxy metrics like conversion rates, which can lead to decisions that inadvertently harm core business profitability. This paper addresses these challenges by introducing a comp rehensive and scalable Bayesian decision framework designed for profit optimization in multi - variant (A/B/n) experiments. We propose a hierarchical Bayesian model that simultaneously estimates the probability of conversion (using a Beta - Bernoulli model) and the monetary value of that conversion (using a robust Bayesian model for the mean transaction value). Building on this, we employ a decision - theoretic stopping rule based on Expected Loss, enabling experiments to be concluded not only when a superior variant is identified but also when it becomes clear that no variant offers a practically significant improvement (stopping f or futility). The framework successfully navigates "revenue traps" where a variant with a higher conversion rate would have resulted in a net financial loss, correctly terminates futile experiments early to conserve resources, and maintains strict statisti cal integrity throughout the monitoring process. Ultimately, this work provides a practical and principled methodology for organizations to move beyond simple A/B testing towards a mature, profit - driven experimentation culture, ensuring that statistical conclusions translate directly to strategic busines s value.
Distinguishability of causal structures under latent confounding and selection
Carey, Ryan, Ansanelli, Marina Maciel, Wolfe, Elie, Evans, Robin J.
Statistical relationships in observed data can arise for several different reasons: the observed variables may be causally related, they may share a latent common cause, or there may be selection bias. Each of these scenarios can be modelled using different causal graphs. Not all such causal graphs, however, can be distinguished by experimental data. In this paper, we formulate the equivalence class of causal graphs as a novel graphical structure, the selected-marginalized directed graph (smDG). That is, we show that two directed acyclic graphs with latent and selected vertices have the same smDG if and only if they are indistinguishable, even when allowing for arbitrary interventions on the observed variables. As a substitute for the more familiar d-separation criterion for DAGs, we provide an analogous sound and complete separation criterion in smDGs for conditional independence relative to passive observations. Finally, we provide a series of sufficient conditions under which two causal structures are indistinguishable when there is only access to passive observations.
Estimating the strength and timing of syntactic structure building in naturalistic reading
A central question in psycholinguistics is the timing of syntax in sentence processing. Much of the existing evidence comes from violation paradigms, which conflate two separable processes - syntactic category detection and phrase structure construction - and implicitly assume that phrase structure follows category detection. In this study, we use co-registered EEG and eye-tracking data from the ZuCo corpus to disentangle these processes and test their temporal order under naturalistic reading conditions. Analyses of gaze transitions showed that readers preferentially moved between syntactic heads, suggesting that phrase structures, rather than serial word order, organize scanpaths. Bayesian network modeling further revealed that structural depth was the strongest driver of deviations from linear reading, outweighing lexical familiarity and surprisal. Finally, fixation-related potentials demonstrated that syntactic surprisal influences neural activity before word onset (-184 to -10 ms) and during early integration (48 to 300 ms). These findings extend current models of syntactic timing by showing that phrase structure construction can precede category detection and dominate lexical influences, supporting a predictive "tree-scaffolding" account of comprehension.
Trajectory Prediction via Bayesian Intention Inference under Unknown Goals and Kinematics
Yin, Shunan, Lu, Zehui, Mou, Shaoshuai
Abstract--This work introduces an adaptive Bayesian algorithm for real-time trajectory prediction via intention inference, where a target's intentions and motion characteristics are unknown and subject to change. The method concurrently estimates two critical variables: the target's current intention, modeled as a Markovian latent state, and an intention parameter that describes the target's adherence to a shortest-path policy. By integrating this joint update technique, the algorithm maintains robustness against abrupt intention shifts and unknown motion dynamics. A sampling-based trajectory prediction mechanism then exploits these adaptive estimates to generate probabilistic forecasts with quantified uncertainty. Experimental results demonstrate that the proposed approach significantly outperforms non-adaptive and partially adaptive methods. The method operates in real time around 270 Hz without requiring training or detailed prior knowledge of target behavior, showcasing its applicability in various robotic systems. Real-world autonomous systems such as self-driving cars, service robots, and surveillance drones frequently face intention inference tasks [1]: they must determine what another agent or human is trying to achieve and where it is likely to go next [2], [3]. These tasks are inherently challenging for several reasons. First, the target's motion dynamics are often unknown. For example, a pedestrian may switch between walking, jogging, or stopping unpredictably. Second, the agent's intention may shift during execution, such as changing to a new goal without any observable signal, i.e., in a non-cooperative fashion.
Meta-Learning Theory-Informed Inductive Biases using Deep Kernel Gaussian Processes
Zakirov, Bahti, Tkačik, Gašper
Normative and task-driven theories offer powerful top-down explanations for biological systems, yet the goals of quantitatively arbitrating between competing theories, and utilizing them as inductive biases to improve data-driven fits of real biological datasets are prohibitively laborious, and often impossible. To this end, we introduce a Bayesian meta-learning framework designed to automatically convert raw functional predictions from normative theories into tractable probabilistic models. We employ adaptive deep kernel Gaussian processes, meta-learning a kernel on synthetic data generated from a normative theory. This Theory-Informed Kernel specifies a probabilistic model representing the theory predictions -- usable for both fitting data and rigorously validating the theory. As a demonstration, we apply our framework to the early visual system, using efficient coding as our normative theory. We show improved response prediction accuracy in ex vivo recordings of mouse retinal ganglion cells stimulated by natural scenes compared to conventional data-driven baselines, while providing well-calibrated uncertainty estimates and interpretable representations. Using exact Bayesian model selection, we also show that our informed kernel can accurately infer the degree of theory-match from data, confirming faithful encapsulation of theory structure. This work provides a more general, scalable, and automated approach for integrating theoretical knowledge into data-driven scientific inquiry in neuroscience and beyond.
Surjective Independence of Causal Influences for Local Bayesian Network Structures
Drury, Kieran, Barons, Martine J., Smith, Jim Q.
The very expressiveness of Bayesian networks can introduce fresh challenges due to the large number of relationships they often model. In many domains, it is thus often essential to supplement any available data with elicited expert judgements. This in turn leads to two key challenges: the cognitive burden of these judgements is often very high, and there are a very large number of judgements required to obtain a full probability model. We can mitigate both issues by introducing assumptions such as independence of causal influences (ICI) on the local structures throughout the network, restricting the parameter space of the model. However, the assumption of ICI is often unjustified and overly strong. In this paper, we introduce the surjective independence of causal influences (SICI) model which relaxes the ICI assumption and provides a more viable, practical alternative local structure model that facilitates efficient Bayesian network parameterisation.
SAIP: A Plug-and-Play Scale-adaptive Module in Diffusion-based Inverse Problems
Solving inverse problems with diffusion models has shown promise in tasks such as image restoration. A common approach is to formulate the problem in a Bayesian framework and sample from the posterior by combining the prior score with the likelihood score. Since the likelihood term is often intractable, estimators like DPS, DMPS, and $π$GDM are widely adopted. However, these methods rely on a fixed, manually tuned scale to balance prior and likelihood contributions. Such a static design is suboptimal, as the ideal balance varies across timesteps and tasks, limiting performance and generalization. To address this issue, we propose SAIP, a plug-and-play module that adaptively refines the scale at each timestep without retraining or altering the diffusion backbone. SAIP integrates seamlessly into existing samplers and consistently improves reconstruction quality across diverse image restoration tasks, including challenging scenarios.