Directed Networks
Efficient Structure Learning and Sampling of Bayesian Networks
Kuipers, Jack, Suter, Polina, Moffa, Giusi
Editor: Bayesian networks are probabilistic graphical models widely employed to understand dependencies in high dimensional data, and even to facilitate causal discovery. Learning the underlying network structure, which is encoded as a directed acyclic graph (DAG) is highly challenging mainly due to the vast number of possible networks. Efforts have focussed on two fronts: constraint based methods that perform conditional independence tests to exclude edges and score and search approaches which explore the DAG space with greedy or MCMC schemes. Here we synthesise these two fields in a novel hybrid method which reduces the complexity of MCMC approaches to that of a constraint based method. Individual steps in the MCMC scheme only require simple table lookups so that very long chains can be efficiently obtained. Furthermore, the scheme includes an iterative procedure to correct for errors from the conditional independence tests. The algorithm not only offers markedly superior performance to alternatives, but DAGs can also be sampled from the posterior distribution enabling full Bayesian modelling averaging for much larger Bayesian networks.
Information Planning for Text Data
Information planning enables faster learning with fewer training examples. It is particularly applicable when training examples are costly to obtain. This work examines the advantages of information planning for text data by focusing on three supervised models: Naive Bayes, supervised LDA and deep neural networks. We show that planning based on entropy and mutual information outperforms random selection baseline and therefore accelerates learning.
Bayesian Recurrent Neural Networks
Fortunato, Meire, Blundell, Charles, Vinyals, Oriol
In this work we explore a straightforward variational Bayes scheme for Recurrent Neural Networks. Firstly, we show that a simple adaptation of truncated backpropagation through time can yield good quality uncertainty estimates and superior regularisation at only a small extra computational cost during training, also reducing the amount of parameters by 80\%. Secondly, we demonstrate how a novel kind of posterior approximation yields further improvements to the performance of Bayesian RNNs. We incorporate local gradient information into the approximate posterior to sharpen it around the current batch statistics. We show how this technique is not exclusive to recurrent neural networks and can be applied more widely to train Bayesian neural networks. We also empirically demonstrate how Bayesian RNNs are superior to traditional RNNs on a language modelling benchmark and an image captioning task, as well as showing how each of these methods improve our model over a variety of other schemes for training them. We also introduce a new benchmark for studying uncertainty for language models so future methods can be easily compared.
Madrid Advanced Statistics and Data Mining Summer School
The Madrid ASDM summer school is in its thirteenth edition this year, with hundreds of students from all over the world having attended so far. It comprises 12 intensive (15 lecture hours) week-long courses, and a student may attend from one up to six courses. The courses cover topics such as Neural Networks and Deep Learning, Bayesian Networks, Big Data with Apache Spark, Bayesian Inference, Text Mining and Time Series. Each course has theoretical and practical classes, the latter done with R or python. While the summer school is mainly attended by people from academia - PhD students and researchers-, people from the industry also assist.
Predictor Variable Prioritization in Nonlinear Models: A Genetic Association Case Study
Crawford, Lorin, Flaxman, Seth R., Runcie, Daniel E., West, Mike
The central aim in this paper is to address variable selection questions in nonlinear and nonparametric regression. Motivated by statistical genetics, where nonlinear interactions are of particular interest, we introduce a novel, interpretable, and computationally efficient way to summarize the relative importance of predictor variables. Methodologically, we develop the "RelATive cEntrality" (RATE) measure to prioritize candidate genetic variants that are not just marginally important, but whose associations also stem from significant covarying relationships with other variants in the data. We illustrate RATE through Bayesian Gaussian process regression, but the methodological innovations apply to other nonlinear methods. It is known that nonlinear models often exhibit greater predictive accuracy than linear models, particularly for phenotypes generated by complex genetic architectures. With detailed simulations and an Arabidopsis thaliana QTL mapping study, we show that applying RATE enables an explanation for this improved performance.
Speech Emotion Recognition Considering Local Dynamic Features
Guan, Haotian, Liu, Zhilei, Wang, Longbiao, Dang, Jianwu, Yu, Ruiguo
Recently, increasing attention has been directed to the study of the speech emotion recognition, in which global acoustic features of an utterance are mostly used to eliminate the content differences. However, the expression of speech emotion is a dynamic process, which is reflected through dynamic durations, energies, and some other prosodic information when one speaks. In this paper, a novel local dynamic pitch probability distribution feature, which is obtained by drawing the histogram, is proposed to improve the accuracy of speech emotion recognition. Compared with most of the previous works using global features, the proposed method takes advantage of the local dynamic information conveyed by the emotional speech. Several experiments on Berlin Database of Emotional Speech are conducted to verify the effectiveness of the proposed method. The experimental results demonstrate that the local dynamic information obtained with the proposed method is more effective for speech emotion recognition than the traditional global features.
Momentum-Space Renormalization Group Transformation in Bayesian Image Modeling by Gaussian Graphical Model
Tanaka, Kazuyuki, Nakamura, Masamichi, Kataoka, Shun, Ohzeki, Masayuki, Yasuda, Muneki
A new Bayesian modeling method is proposed by combining the maximization of the marginal likelihood with a momentum-space renormalization group transformation for Gaussian graphical models. Moreover, we present a scheme for computint the statistical averages of hyperparameters and mean square errors in our proposed method based on a momentumspace renormalization transformation.
Basics of Bayesian Decision Theory
The use of formal statistical methods to analyse quantitative data in data science has increased considerably over the last few years. One such approach, Bayesian Decision Theory (BDT), also known as Bayesian Hypothesis Testing and Bayesian inference, is a fundamental statistical approach that quantifies the tradeoffs between various decisions using distributions and costs that accompany such decisions. In pattern recognition it is used for designing classifiers making the assumption that the problem is posed in probabilistic terms, and that all of the relevant probability values are known. Generally, we don't have such perfect information but it is a good place to start when studying machine learning, statistical inference, and detection theory in signal processing. BDT also has many applications in science, engineering, and medicine.
Topology Estimation using Graphical Models in Multi-Phase Power Distribution Grids
Deka, Deepjyoti, Chertkov, Michael, Backhaus, Scott
Distribution grid is the medium and low voltage part of a large power system. Structurally, the majority of distribution networks operate radially, such that energized lines form a collection of trees, i.e. forest, with a substation being at the root of any tree. The operational topology/forest may change from time to time, however tracking these changes, even though important for the distribution grid operation and control, is hindered by limited real-time monitoring. This paper develops a learning framework to reconstruct radial operational structure of the distribution grid from synchronized voltage measurements in the grid subject to the exogenous fluctuations in nodal power consumption. To detect operational lines our learning algorithm uses conditional independence tests for continuous random variables that is applicable to a wide class of probability distributions of the nodal consumption and Gaussian injections in particular. Moreover, our algorithm applies to the practical case of unbalanced three-phase power flow. Algorithm performance is validated on AC power flow simulations over IEEE distribution grid test cases.
Convergence Rates of Latent Topic Models Under Relaxed Identifiability Conditions
In this paper we study the frequentist convergence rate for the Latent Dirichlet Allocation (Blei et al., 2003) topic models. We show that the maximum likelihood estimator converges to one of the finitely many equivalent parameters in Wasserstein's distance metric at a rate of $n^{-1/4}$ without assuming separability or non-degeneracy of the underlying topics and/or the existence of more than three words per document, thus generalizing the previous works of Anandkumar et al. (2012, 2014) from an information-theoretical perspective. We also show that the $n^{-1/4}$ convergence rate is optimal in the worst case.